Array 1 66094-65468 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWU01000001.1 Photorhabdus luminescens strain H3 NODE_1_LENGTH_255003_COV_18.6101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 66093 28 100.0 32 ............................ TGTAATAACTGATCCATACTGATAAGGTTAGA 66033 28 100.0 32 ............................ TCCGCACCTGGCTTACCATACACCAATCTATC 65973 28 100.0 30 ............................ TGAATACATCATTCGACGACCATCAATGAT 65915 28 100.0 32 ............................ TATTCCAATGCGCATATGATATCCTATCATAC 65855 28 100.0 32 ............................ AGCAAAGTCTGATGGAAGCGTTATTTGCTAAA 65795 28 100.0 32 ............................ GATCCCAGTGTCGCCACTGCCTCGGCAACGGT 65735 28 100.0 32 ............................ ATTTCAACCGCGCCGCCAGTAAACGAACCAGA 65675 28 100.0 32 ............................ AAAGCAATGTTCCCAAAACTGGATGATGTCCA 65615 28 96.4 32 .............T.............. ATAAGCCCAAACGGGCAGGAGCTTAACATGAA 65555 28 100.0 32 ............................ GAACACAATTAAGCACACTTGATGGATTGGAA 65495 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAACCAACGTAGTTGGTTATCGACTAGGAAAGCAGTTTCTGAGAGATTTATTTCCATAGCAATAGATAATAGAGTTTCATCTGGAAGCCAATTATCTAATATAACAACAGCGGCTGGATTACCAGAGAATGGGCTATCGGTGAATGCATCGACATGATAAATGGGTAGCGAAGTCATTTGTATCTCTCTTAAAATAGAATTAGTCATGAAAAAGGGATCAATCTTCTTAATTTTTATAAAAAAATTGCCCGCTATTTTATACAACTATATGTGATCGTAAAAAGAGTAAGCAGCTCAGTTTTAGGATATTTAGCTGGTTTTCTGAAGCATTGGGTATCATTGCATTAACCAGATATGCAACCCTATTTTTACCCTTTTTTTGCAGTTAATTTTAACTTGTTGATTTTTATATAATATTATATTGTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTGTTCGATATGCATCAATTGATATGTTTTTGTGCATATTCTTCACTGTTAACCCATTGGTGGTCTTTTTCCCAAGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGATGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCACCAGTAAAGACTTCAACCACCAACAAGCTATTAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 101918-100931 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWU01000001.1 Photorhabdus luminescens strain H3 NODE_1_LENGTH_255003_COV_18.6101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 101917 28 100.0 32 ............................ TTCATCCGTTAAAATGACAACACTTTCGTCAT 101857 28 100.0 32 ............................ AATAACAACAATTTCTGATGAAGATATTTCAC 101797 28 100.0 32 ............................ AATTCCTATTAACGCCGCAGATATAGCTTGCA 101737 28 100.0 32 ............................ TCATGTGGCTCCAGCCATCGAATACGTTTATT 101677 28 100.0 32 ............................ TGGATCAATCCAGAAGACAGTAAATCGGGAAA 101617 28 100.0 32 ............................ GTATGAAAAGTTGTTCTTTTCTACATACGGAA 101557 28 100.0 32 ............................ AATACAGCCTGCATAAATACCATCGCCATCAG 101497 28 96.4 32 ...T........................ GGGAAGATATTGTGGGACGTGGCAGGGAGATG 101437 28 100.0 32 ............................ TTACAATAAAGCACGTATAACCGCTACACACT 101377 28 100.0 32 ............................ TATAATCTGACGGCGGACCAGGTGATGAAACT 101317 28 100.0 32 ............................ TGATGCAACTGAGACAGCTGGTAAACATCCAG 101257 28 100.0 32 ............................ TATGGGAAAATTTACTTATGGACGCAGCCAGG 101197 28 100.0 32 ............................ ATATGTTAAATTTCCTAAATAAAATAATGTTA 101137 28 100.0 32 ............................ AACCCGCCGAATGAGATTTGTTTCCTGTCCAG 101077 28 100.0 32 ............................ ACCAATGATCGATAAATTTAGTCATAAATTTG 101017 28 100.0 32 ............................ TCGTTAATCGGGGAGCGTAGCCCAGTTGTTGG 100957 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAGAAGCTGGTCTGGAAGTTGTTATGGATCGCTGCCCGAAAATTGAAATTCCGAGATTGGGACTCGAAAAATAATATTTTTCAGTTTGTAGTTACTTAGTTTCTAATCAATGGATGAAGGGAGCCTGGCACCAATATCTAATACAAACTTAAGGAGTTGGATAAGAAGTGGTGCCCGGGTTCCGAGTGTTCAAAATAATGCTTAAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTGCAGTTATTACAATGTATTAAGGAACATTTGGTTGTTCTTGTGGTGGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGACGCTTTTGCTATGCCCCAGTTTTGACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAAATATCGCCTAAAAAAAGGGTTTTTTCATTTTTTATCATTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CACGATAACTGCCTTAGGTTGTTTAGGTATAAATGGGAGATTAATTGCGCAGCCTTGGGGCCAGTAGCTGATTGCGGATAGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGCGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGCCTTTTTTTGCTTTAATTGTGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14437-13389 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWU01000004.1 Photorhabdus luminescens strain H3 NODE_4_LENGTH_160533_COV_17.2917, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14436 28 100.0 32 ............................ GATCAAAGTTAACTACTTCGGCATTGAGTTAT 14376 28 100.0 32 ............................ TTCTGGCGGTGCGGGTGTTGAAGGTGACCAAA 14316 28 100.0 32 ............................ ATTACCTAAACGTATAGTCTCTACCATGTTTA 14256 28 100.0 32 ............................ TCAACCGTTCTGCAACCGCATTCAGAATGAAC 14196 28 100.0 32 ............................ GGCATGGTTCGCTACTGGAGCAGAAACTTGCA 14136 28 100.0 32 ............................ TAAAGTGAGGACCTCGGAGAAATCAACAACTT 14076 28 100.0 32 ............................ TCGTTGTCAACTTTATTATCAATGATTTCACC 14016 28 100.0 32 ............................ TATAACCTTAATGACCTGCATAAGGCAGCAAT 13956 28 100.0 32 ............................ AGCAAAATCAGTAACTGGATGCTCTTTAACAA 13896 28 100.0 32 ............................ TATGGGTGTTATCGAAATCGAGAATCTGGATA 13836 28 100.0 32 ............................ CAAGGGTATACGACCCCATTCGTCAGATCAAA 13776 28 100.0 32 ............................ TGTAGGTTCGGATTTAGGTTGGTTCGTATAAC 13716 28 100.0 32 ............................ ATTTTGGTGGCTGATAATGGAGGGGGCGGGGA 13656 28 100.0 32 ............................ ATAGTTCCCTCGGGCATTTCAGGCATATCTAT 13596 28 100.0 32 ............................ GTTGCTGATGACGGCACAATTCAGGTTGAAAA 13536 28 100.0 32 ............................ TCAAGAAAATTAAAATTAACGTCGAGAAGAGA 13476 28 100.0 32 ............................ TGAATGACACCGGCCAACCTATTGGTTGCCCC 13416 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCTGCTATTCGTTATATGCAACGTCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAATTGTTGGAACGATTGGGTTTTGAACGTGAAGGTTATGCCAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCATTGACAGATGACAAATGGAGTGGAAAAAGTTGATTATTAAGCTGTACTGTCACCAAATAAAGTAAATTAAATTAGTAATGATGAATTAAACCATCGTTGAAAATCTGCCTTCCTCACACCTTATTTTGACCCTTTTTTAAGGGCTGATTTTAATTTATTGATTTTTAATGGAATATTGTTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATGCTTTAATCGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : AGTTAATGAGTTCTAGTGCATAAGCGTGGATTTATGTATACTCGCCGCTTTTGTTAGCAAAGTGAATGATTAACCATGAATAATATTGCTGCCTTGTCTTTGGCTGCTGTGATGTTTACTAGCGGTTGCGCTACGATTATGGGTGATAAAACTCAGCATGTTCAGGTTGATAGTAATCCATCAGGGGCCATGTTCTCTATCAAAGATGAATTAGGTAGGGTTGTTGCTCAAGGGAAAACGCCTCAAGATGTGATTTTAGAAAAGTCTGATGGAAGTTATTTTGGTAAAAAAGACTATCTGGTTACTTTTACTAGAGAAAATTCTGAGTCTGTAACGTTACCAATTAAGGCGAGCGCTAATGGTTGGTACATTGGCGGTAATTTGTTCTTTGGTAGTTTGATTGGTTGGCTCTTAATTGATCCATTTAATGGTGGGATGTATACGCTGCATCCAAAAGCAGTGAATGCCCTGTTGCCTCAGAAACCAGTGAGTGCTGAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 107161-106532 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWU01000004.1 Photorhabdus luminescens strain H3 NODE_4_LENGTH_160533_COV_17.2917, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107160 28 100.0 33 ............................ CTAAGTTAATCAACAGCATTTAATAATGCTGTT 107099 28 100.0 32 ............................ AACAGTAGGCGGAATAGACACATGTAACTCTA 107039 28 100.0 32 ............................ AGGGGAATTCGACAAATGGTTGAAAGAACATG 106979 28 100.0 32 ............................ AATGAATGGCGGACAGGCTCCCGGCTTAGAAC 106919 28 100.0 32 ............................ AACAATCACAGCGGCCACGCCAACCCGAAGTG 106859 28 100.0 32 ............................ ACATGCGCTGTGATGAGCGCGTATATTCCTCC 106799 28 96.4 32 ...........T................ GTATTGTCGCGTACTTCAATTGGCGTCTGGTA 106739 28 96.4 32 ...........T................ TTTGCTTTAGACTGAGCTAAATTGAAAAGTTG 106679 28 96.4 32 ...........T................ TTATCGGTAAAAATGCGGTCCGCTCTGACACC 106619 28 96.4 32 ...........T................ GTATTGTCGCGTACTTCAATTGGCGTCTGGTA 106559 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTGTACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGTATTGATAGTGGCCGTGGAGTTTTAACTCACCAGGGGGATGCTATCAGAAATATTGAGGGCTCATTTCCTGGGGCAATAACAAATGGTTTTCATCTGGCAACAAAAGGGGCTTGTTATGCTAGTGCAACTTCTGGAATGGGTGTAGATGGAAAGCCTAGATCGGTAGGTCATTTTACCCCGGATGTTGTATACACTGAATACGGTTTTGGGTTCGATGCGTCAAGGGTTGTTCCTGTGGCCTCAGAGAACCGCCCCCGCAATATAGCATTTAATTACATAGTGAGAGCAGCATAATGGCTGAATAGAAGTACCTTTTGAACCAAAAATAGAAGGGGAGGGTGCTCTACTTAAATGAAAGAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAATAAATATTATTCACCCCGTAAAAAAGGGTTTTTTGTTTTTTATAATGATTATTCTTTAACATTCCGTAGATTGGGGTTAATATGCAACA # Right flank : GCCAGCACTCTCACTTACCAACTGGTTTTCAGAACTGGCGGCTCAAGTGTGTCGATGAGAACAATGAATGTGTGTTTTATGAAGATAGGGATTCCTGTGACATTCCAGAATGCTGTCGTTTAGATATTCGTGTCCGAATGCCGGAAGATTCAGTTTGGAATTTAAAACAGAAGGAGTTGCAGGAAGAGATAGAAGGAATAGGAGAAAAATAGTTTCCAGATATTAAATATAAATGATTTTGATATATTTTAGATTCTAAAGTGTTGAATTGCTTATTGTTGCTAGTGATATAAAAACAGTCAGTCTCCTAATAAATAGGAATACTGTATTACTCCTCTTTCTGCACTAGACTTTAATTTTAATAAATTACAGTCGGATTGTTTTTACAATAATTAAATATGTTGATTATAAAAAATATTATTCTGCTTAAGGAGGAATTACATGAGTCAAAAAAATGATTTTAAGGCTTTTTCTATTAGTAATAATGCTAATGTAATTAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 111020-110812 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUWU01000004.1 Photorhabdus luminescens strain H3 NODE_4_LENGTH_160533_COV_17.2917, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 111019 28 100.0 32 ............................ TCCTGTAATTTCACTCCAAGGCTTAGGAGGAA 110959 28 100.0 32 ............................ TGTTAGCTTGCACATCTCTTTCAGGCCAATAT 110899 28 100.0 33 ............................ CAAACCCGAAAACTGGTCAGATGAGATACTGGT 110838 27 85.7 0 ...C................T...-..T | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCTTTAACAAGTAAATCTTAAATAAATGCAAATGTATTTTTAAATATTATTTTTTATAGAAATTATTTAATTCAGATATTTTTCTGAATGGTCAATGATAGTCGGTAATACTTACTTTTTTCCATAGTAACTACTGAAAGATCAGGCCGATATGAAGGATATATTGTTACAGAGAGCATCTGTATAAGGTAAAATTCAGATCTTACAGCCGTTATTACCTTATATCCCCATATCTCCGAATGGGAAAAAATCAATTTTGTTGAGTGATGAATGAGATAAGGTAGAAGATTTATTGAAACGTAATCGTTAGCTAAGAAAGTTGCGTCAGTGGTAACTTAAAAACTTGAGCCTCTCTTGACCTAATTTTTGACCCTTTTTTAGTAACCAATTTTAATTCATTGATTTTTAAACAAATATTGCTTTCCCCGTAAAAAAGGTTTTTTTATTTTTTATAATGATTACACTTTAACATTCAGTAGGTTGGGGTTAATATGTAACA # Right flank : TCTTAAAGTTCTAGGTGTAGTTTAGAGTTATAAAAGCAAGGAATTTCTATCGAGTGATAAGACTGAAAATATTGGCTTCATATTGAGATTGGTAAATACTCTACCTCAAGGATGAGGTAGAGTATAAATGAGCTTGAGTTTTAATTGAGGCTTTTCGCATTTTACATGAAGCTACGCAAGCTTTATCATAAATTTAATTACTTAAATTTCCCTATAATCCAACTTTTCGAATGAATTTATAGCGCTATTTTTCGATAGATTATAAATCTCCACTCCTTTGCTTATTGCTATTTCATGAGCTAGGTTGAAACAAGGAATGATGAAATCGTGTAAATTATTATTTAATTTGGTATCGAGTTTGTCATTTTGAGTTTCATAAAATCTTGGTTTTGAAAAATTATTCATATCTAAACCTGCGAAATATATTTTTTTATAGTCCAAAAATAACGCTATTTGTAGAGCGGAATAGGCAACTGTTGTTCCGTTATAGAATCCGAGAT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //