Array 1 46060-46405 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJL01000034.1 Cronobacter turicensis strain cro863W1 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 46060 29 100.0 32 ............................. AGACAATCTGATACTGCGTGACCATCCCTACA 46121 29 100.0 32 ............................. TTTGTACAGGCATTATTCCGCTCCTTTCCAGG 46182 29 100.0 44 ............................. CATTGCCACCTGCTCGGTTGTTGTTACGCGCACTACGTCGGAGC 46255 29 100.0 32 ............................. TCGATGATCTGCATATCGACAGGCGAGACGGT 46316 29 100.0 32 ............................. TGAAATGATCGTGCGCGTAGTCATGTGCGCCC 46377 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 6 29 100.0 35 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCCAATGGATGATGGCGAACAACATCGCGTTTATCGTCGTTAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACCGTCACAAGTCAGGTGAAACAGCTTAACGGTAAAAGCGGGATACTAAGCCAGGTCATCACGCTGGAGCCCGAAGGCGAGGTAGTCGCCGATGCGCTCATCACCTTTGTGTGTATCGATCTGAAAACCCAGAAAGCGCTGCCGATTGACGGCGAGCTGCGTGAAAAACTGGAAAAACTCACAGGGTAAATTCTGCAATAGCGGTGCGTGTGCCCGCCATCGTGGATTTATCGCCGCTGAAGATAAACAATCCGGTAGATGTTAACGGCCCACAAGCGTTGCTGAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATCCTAAGCAGTACAAAGCGTTACTTTTAGT # Right flank : TATTCACGCGAACCGTTCAGCCAGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24507-23808 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJL01000061.1 Cronobacter turicensis strain cro863W1 contig61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24506 28 96.6 32 .........................-... CAGTTTAGTAATAAAGGGGGCCTGGTCATTGC 24446 29 100.0 32 ............................. GCAGCGGGACTCTAACGGTTCATCTAAACCTT 24385 29 100.0 32 ............................. CTGGCGCAGAATCGCAAAAATGCTGCTTCGGA 24324 29 100.0 32 ............................. TGGAACGAGACTCAGATACCAGTCAGCAAAAT 24263 29 100.0 32 ............................. TACAGTGCCGTGCCGTGTTGCAGGCTGGTTTG 24202 29 100.0 32 ............................. TAAATAACATCCGCGCTCTGCACCATACTGAG 24141 29 96.6 32 ...............A............. ATGACCCTCAGCGAGCTTGCGTTGCGAGTAGA 24080 29 96.6 32 .........A................... GGTTGCCGCCGGTTGGGTGTGAGTGTGAGGCA 24019 29 100.0 32 ............................. TTCATACCAGACTCAGTGTTTTGCGGTCAGAC 23958 29 100.0 32 ............................. AGTGGGAAAAAAACGCGCAGGCACAGCAAGAG 23897 29 100.0 32 ............................. GCGTCCTGTATCTCGCTAAACGTGACGGTCGG 23836 29 93.1 0 ..........................A.A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CGCCCTTTTAAA # Right flank : AACTTTGTTGGCTGTACGAACAGCGCGACGCTGTCAGCCCCATATCCCGTCACATTCTTCAGCACCGTTTATACTTCAAAGCCATTGTTAAATTCTCAAGACTGCGCAACAAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGTTGCACGCGCATCTCATCTGCCACTGCCTGCTTATTGAAACTGAACATCACGGGCTGGTGCTGGTGGATACCGGTTTTGGTTGTGATGATATGCGCCATCCTGGCCGCCGTTTGCCGCTCTTTTTCCGGGCGCTGAACAATATTCAGTACCGGGAATCATTAACGGCGCTACATCATATTCAGGCGCTGGGCTTTAAGGCGGAAGATGTCCGCCACATTGTGCTGACGCATCTGGATTTCGACCACGCGGGCGGCATCAGCGATTTTCCGCACGCGCAGGTGCATTTGATGCAACGGGAAATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2078-2665 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJL01000134.1 Cronobacter turicensis strain cro863W1 contig134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 2078 29 100.0 32 ............................. CCAGCTCGCGGATAGTCACGCTCAGGCTGGAT 2139 29 100.0 32 ............................. GTGACGAATTGCAGGGTAAGCGCAAAGAGCCG 2200 29 100.0 42 ............................. AGTCATGTACGACATTGATGCGGCGCAGGGAGCGCAACTGGA 2271 29 100.0 32 ............................. CGCCTCAACTGAAACTGGTTGAGACAGACGAA 2332 29 100.0 32 ............................. CATCAGCTACCAGTTGAGCATTAGCAGCGTCA 2393 29 100.0 32 ............................. ATTTAGGATCGTTAACTTTTAACTGGCATAAA 2454 29 100.0 32 ............................. GGATATTATTGCAGAGGCTAAAAGAGAAGAAG 2515 29 100.0 32 ............................. CCATCAATAGTTATTGTTTCGCCGTCAGGCAG 2576 29 96.6 32 ............C................ GATTGCGCCAGCGCGGTGATTAAGGCGCTCAG 2637 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ========================================== ================== 10 29 99.3 33 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGGCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCAGACATGCTGCCGCCCGCGATACCACAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTGGTCGTGACGGAAAGCGTCCCGCCCAGGCTTCGCGGGCGGCTTGCCATCTGGCTGCTGGAGCTGCGCGCAGGGGTTTACGTGGGGGACGTGTCGCGCCGGGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAAGAGGGCAATGTAGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGACGGATTCCGGTGGATTTAGACGGCCTGCGGCTTGTTTCTTTTTTACCGTTGGAAAATCAGTAGGTTAATGGTTCTTTAATAATATGAGATTGTAAACCAAACGTTGGTAGGATGTTGGGTGCCCAAAAAGTGTAATAAATACAGTGGTGTAGTTTTAGA # Right flank : ATGGCCCGCATTTCCAGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //