Array 1 751006-752132 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046283.1 Salmonella enterica strain FDAARGOS_687 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 751006 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 751067 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 751128 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 751189 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 751250 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 751311 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 751372 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 751433 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 751494 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 751555 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 751617 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 751678 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 751739 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 751800 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 751861 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 751922 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 751983 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 752044 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 752105 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 768265-769619 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046283.1 Salmonella enterica strain FDAARGOS_687 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 768265 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 768326 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 768388 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 768449 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 768510 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 768571 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 768632 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 768693 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 768754 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 768815 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 768876 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 768937 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 768999 29 100.0 74 ............................. AATAAGGCGCGGTACCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 769102 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 769163 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 769224 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 769285 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 769346 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 769407 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 769468 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 769529 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 769590 29 96.6 0 A............................ | A [769616] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //