Array 1 14-651 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAC01000317.1 Salmonella enterica subsp. enterica serovar Potsdam strain BCW_2762 NODE_317_length_1782_cov_1.12625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 ............................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 75 29 100.0 32 ............................. GTAGCGCGGCCAGTGTCACCGACACCTTGTCA 136 29 96.6 32 ............T................ TATCCTGGCTGGACGCCACTACCCGGTTTTTG 197 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 258 29 100.0 32 ............................. GACCAGAGAGGGCGAATTCCAATTAACCTCAT 319 29 96.6 32 ...................C......... GGGAAAAAAGTTTACCTGGTTCGTCTGGTTCA 380 29 100.0 32 ............................. GGCGTGCGCACTCGGCTCGTATTGGACGCATT 441 29 100.0 32 ............................. CAGACGGTCGCGCTGCGTCATATAGTCGCCGC 502 29 96.6 32 ............T................ TTAAAATGTGATTCAAGTCAATAAATGTGCAA 563 29 100.0 32 ............................. CACGAGTGGCAAATTGATTTCGACGAAAAACC 624 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCATCCTTTTGCTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22152-20658 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAC01000063.1 Salmonella enterica subsp. enterica serovar Potsdam strain BCW_2762 NODE_63_length_22640_cov_1.24875, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22151 29 100.0 32 ............................. GCATTTGTCGCAGTAATATTCCTCACGACGAT 22090 29 100.0 32 ............................. CCCGCGAGGGATTTTTTTATGCCCGGAGTAAA 22029 29 100.0 32 ............................. CCGCTGGTCGCCCATTTCATAGGCATTCTCAA 21968 29 100.0 32 ............................. ACTGACCAGGTGCAGGAACTGCCGGTCGCTGA 21907 29 100.0 32 ............................. CCTGTACCTCTCCTGTAAATGTTCCGCTAGTT 21846 29 100.0 32 ............................. TTTACGGTATTCGTTGTCAGCAATCCTGATCA 21785 29 100.0 32 ............................. CAGCTGCTTCGCACCTGCCGGGCTACGCCGAA 21724 29 100.0 32 ............................. CTTTCTTTAACGTCCAGTCATTCCTTGAGAAC 21663 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCGTCTGTGCCG 21602 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 21541 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 21480 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 21419 29 100.0 32 ............................. TAACCTGATTGCCCTGTGATTCCGCTTTCTGA 21358 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 21297 29 100.0 32 ............................. CCTGGCAAATTATTTCCTGGATACTCGATATC 21236 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 21175 29 100.0 32 ............................. GTGACATTGCCAAGAAAAGCCAAACAGGTTGA 21114 29 100.0 32 ............................. TGTCCGGGTTTATCCCCGCCTTAATTGCAGCC 21053 29 96.6 32 ...C......................... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 20992 29 100.0 32 ............................. GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 20931 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 20870 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 20809 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 20748 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 20687 29 96.6 0 A............................ | A [20660] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14750-15816 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAC01000093.1 Salmonella enterica subsp. enterica serovar Potsdam strain BCW_2762 NODE_93_length_15873_cov_1.30755, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14750 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 14811 29 100.0 32 ............................. CGTTATTTTTAATTAACAGATTTTAACTTATT 14872 29 100.0 32 ............................. TCGGTACACGACATGACCACAACGTCATTCAA 14933 29 100.0 32 ............................. CAGACCTGCAATTCTATTTGGGGAACAGGTTG 14994 29 100.0 32 ............................. CCAACGGGGATCGCAAATCACCCTGGCACAAC 15055 29 100.0 32 ............................. GCGCTCAGGGCCGCCCTGCTGCGGGCACTCAT 15116 29 100.0 32 ............................. CCTGATGACCCGATGGGTATCCTTCCCCTGTT 15177 29 100.0 32 ............................. CTCAGGCCGTTACCACTGTCCATCAGGACGTC 15238 29 100.0 32 ............................. TGCCTCCAGTCGTTCACCCGGTAACGCATACT 15299 29 100.0 33 ............................. CATTGTTAATATATATCTGACAGTAACTCGGTA 15361 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 15422 29 100.0 32 ............................. CCTTGCCGTTCACTGCCGGGCTGTCCCGGATG 15483 29 100.0 32 ............................. GAACAACATCCAGTACGCGCTCGGCATTCAGT 15544 29 96.6 32 ...C......................... AATCTGTCCGGTATCGACTGCAGCAAGCCAAT 15605 29 100.0 32 ............................. AGCAGGGCGTGCTATTTGCGGACGAACTGATC 15666 29 100.0 32 ............................. CTCGTGTGTGGAATGCTCAATTCCGTTAATCC 15727 29 100.0 32 ............................. ACATCGAAAAAATGTGGGAAAACCTGCTCAAA 15788 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGACATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGACGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGCGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : AAACTCATTAGTGTGATACTCATCCTTTTGCTGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //