Array 1 3106-3927 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFIQ01000067.1 Escherichia coli strain MEZEC5 67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3106 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 3167 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 3228 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 3289 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 3350 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 3411 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 3472 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 3533 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 3594 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 3655 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 3716 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 3777 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 3838 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 3899 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1005-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFIQ01000175.1 Escherichia coli strain MEZEC5 175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1004 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 943 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 882 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 821 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 760 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 699 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 638 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 577 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 516 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 455 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 394 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 333 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 272 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 209 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 148 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 87 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAACTTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GCGGCTATGGAATTTATGGAGAAGTTTGGTTTTGTGTTCCCTCCGTCAGCGGTGATAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //