Array 1 3603885-3602879 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034199.1 Ralstonia solanacearum strain UA-1617 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3603884 29 100.0 32 ............................. CCGGCTCCCTTGCCGTAGGCGCCCCAGTTGGC 3603823 29 100.0 32 ............................. GCTTCCGTGTGCAGCACACTGATCAGGCCAGC 3603762 29 100.0 32 ............................. CATCGGTGAAAGAGCATTCTTGACGGGCTGAG 3603701 29 100.0 32 ............................. ACTCATCGCCTCCCCAGGCTTCGCGTTGTGCA 3603640 29 100.0 32 ............................. TACGGCGTGGGCGTCTGGCAGCAGCAGAACGC 3603579 29 100.0 33 ............................. TTCTACCTACTGTTCGTCTTGCCGGTTGTCGTC 3603517 29 100.0 32 ............................. CTGGACGGGTTCATCCAATTTTTCCGGCAGCA 3603456 29 100.0 32 ............................. GTCGGCGTCTAAGCCCCTGCCGCGCAAGGCGT 3603395 29 100.0 32 ............................. ACACTGCGCCAGCACCGCCCCCCGATTCCACC 3603334 29 100.0 32 ............................. GACTTGAACACCGAGGCCTGGGCCCAGGTCAA 3603273 29 100.0 32 ............................. CCCTGCCTCAACATCTTCAGCGCTGTAGTACT 3603212 29 100.0 32 ............................. GCTGTGCTGCTCGCGGCCTAGCAACTCCGGTC 3603151 29 96.6 32 .................A........... CGAGCGAGGTGGGCCTTGTTGACCTGGCCGAG 3603090 29 86.2 32 ............TT....A.......T.. GTTCAGGAGTCGAGCGACTTCCTGTCCCGCAT 3603029 29 96.6 32 ............T................ ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 3602968 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 3602907 29 93.1 0 ........................CT... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.2 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTCTCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGAGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTATTGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAATCGCCGGTTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGCGGTGGAATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : CCAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCAGGGTTGGATCAGTCCGCCAGCGCTGCGCGCGCAGCCGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACATCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATTTCGCGCAGCTGCGCTACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCCCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGATG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3613693-3612811 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034199.1 Ralstonia solanacearum strain UA-1617 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3613692 29 100.0 32 ............................. CATATCTACCTGAACGAAACTAAGCGGCTCAT 3613631 29 100.0 32 ............................. CGCGCCGAGCGTCCGTTCCGCCCGTGGCAACA 3613570 29 100.0 32 ............................. CTCGGCGCGCTTGATGGTGCGGCGTCGCGGGA 3613509 29 100.0 32 ............................. GCCAGACCCCACATCGCGAGAATCCCAGCCCC 3613448 29 100.0 32 ............................. AAATATCTGAAGCAACTGGGCCTGGGTGCTGC 3613387 29 100.0 32 ............................. ACGATGCGGCCGGGCATGGTTCATCGAATGAC 3613326 29 100.0 33 ............................. CCAACAACGAACTGGCTACTGCCATTCGTCGGC 3613264 29 100.0 32 ............................. CTCGCTTTGAACATGTGGGAGAGCGAACGCAG 3613203 29 100.0 32 ............................. GCTTCATATTCATCGGCGGGGTGCATGTCTTC 3613142 29 96.6 32 ........T.................... GCGCTGGCGAAGGGTCAGTCGCAGCCGGTCAC 3613081 29 96.6 32 ............C................ CGCCTGAAGCACGGCGGCAATGCGGTGCTGCG 3613020 29 96.6 32 ......T...................... ACGGGTTGGGCACCGCTGTATGAACACTGGCT 3612959 29 93.1 32 .............A..T............ GGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTC 3612898 29 79.3 30 ..A........TCA..........TG... CTGCGCCAACAGCTTACCGTTGATCGTGCC 3612839 29 75.9 0 .C..C......A..T........C.G..T | ========== ====== ====== ====== ============================= ================================= ================== 15 29 95.9 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACAGGACGATCGTGCAGTACCTGCAGTTCGCGCGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGATAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGAGCCGTTTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : TCAGCCAGCCCCATTTCCTCGATCGTTTGCAGGAAGATGAAGAACGTTCATGGACTAACGCCTTTGCTATCTCATTTGGATCATTTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTGTGATCGCCCGTCCGGGAGCGAGAAAAGATAGAAATTTCCTGACATCAAGAAAAGGCATCAGGCTGATATGGAAAAAGGGGCGGCGCGATACTTTGCTTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCATTGGATGTCGCCGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGATTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGACCGATCTCGTCTCCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //