Array 1 2507-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDFJ01000004.1 Streptococcus sp. AC15 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2506 36 100.0 30 .................................... AAATCCTAACTTGCAAAATATTCCTTCACG 2440 36 100.0 30 .................................... GTACCTCCGGCGTGGAAAGGGCATGAAAAT 2374 36 100.0 30 .................................... CTTGTCAGCAATCTCTTCCCATTTCAGAAA 2308 36 100.0 30 .................................... GCCTGTTAGAAGCTGACGCGAGTGATTATG 2242 36 100.0 30 .................................... TTGCTGTTAGCGGTTACCCTGCCTTGCGCT 2176 36 100.0 30 .................................... GTCAGGCATTAGCATATCGCCAAAAGGATA 2110 36 100.0 30 .................................... TTGGGGCACGTAGAGTTTTGTTGCGATTTT 2044 36 100.0 30 .................................... AAGCTATCGGAAAAGAGTGGAACAAGCATT 1978 36 100.0 30 .................................... AATCCGAGAAGAGATTAGTAAGATTTCTGT 1912 36 100.0 30 .................................... AGACATTCTTTATTGTCTCGTTCTATTGCT 1846 36 100.0 29 .................................... GTCACATTGGTCGATATTGGCGATTTGAT 1781 36 100.0 30 .................................... CCTCGCCTATCGCATTCTTGATTGAGTGTT 1715 36 100.0 30 .................................... CTCAACTCAACTCTTCTATTCTGTCGTTGC 1649 36 100.0 30 .................................... TGATTTGGAAATCTTAGCAAAAATAGAAAG 1583 36 100.0 30 .................................... CTTTTGTGCTTTAAGACACCACTCTGGACA 1517 36 100.0 30 .................................... ATGACATACTACATTTCAGACTGTTATCTG 1451 36 100.0 30 .................................... TGTTACTGGAATGAGACTAGGCGAAAGCCT 1385 36 100.0 30 .................................... AGGTAGTGGAGATAAGTTTACTGTATCTAA 1319 36 100.0 30 .................................... ATGATAAAAAACGTAGTCGATTTAAAGATT 1253 36 100.0 30 .................................... AAGATAAAGAACTAAAAAAAGCTATGAATT 1187 36 100.0 30 .................................... TTACACGAATATCTACAGATGGCGTTTTTA 1121 36 100.0 30 .................................... CGCGCTTTTTTGATATAATCATCTCAAAGG 1055 36 100.0 30 .................................... TATCCAGATGGTACGACTGTAGAATTTAGC 989 36 100.0 30 .................................... TCCGCGCTGTTCTAAGAATCGAATTTGTTT 923 36 100.0 30 .................................... ACCATGCTATTCCAAGCATTTTGTGCACCT 857 36 100.0 30 .................................... TTAGCCTGATTGAGCTTTTCCTCACCTTTA 791 36 100.0 30 .................................... TATAATAGTGTTGTGAAATTTATAACTAAA 725 36 100.0 30 .................................... TGATTTCCAAAGAGCAAATTGCTCACGATT 659 36 100.0 30 .................................... ATTGTGACACCGAAAGCAAATGCCGTCTAT 593 36 100.0 30 .................................... AAACGAATTACCACCAATTTCTAGTTTTCT 527 36 100.0 30 .................................... ATTCCCGTTTCCTAAACCGCTAAATAGTGA 461 36 100.0 30 .................................... TAAACTGCTGTGATATTCAGTATCTTCGTT 395 36 100.0 30 .................................... TAGTTAGAAAAGGTTAACGTGTTATTGTTT 329 36 100.0 30 .................................... CTATTATCAATTTCCGAGAGCAGATAGCCT 263 36 100.0 30 .................................... TCACGAAACAACCTGCAGACAAAATAGAAA 197 36 100.0 30 .................................... AGCACGACCGCATGGAACGACAACGGAAAT 131 36 100.0 30 .................................... TAACAGCTGCAACCATCAAAGAAGATAAGC 65 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 38 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCCGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATATGTCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGGTATAATATTAACAAATATAAGGAATCGTTCGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : CATCTTATTTGCTAGATTCCATTTACTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 66442-66274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDFJ01000036.1 Streptococcus sp. AC15 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66441 36 100.0 30 .................................... ACAAGCGATTGAATCGATTCTCTTAATTTA 66375 36 100.0 30 .................................... TGCCGGCCAACTTTACAAATACAGTTAATG 66309 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : AATACTCGGTTTGCGCGTGGGGAATACAT # Right flank : ACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTATTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGCCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTGCAGTGGGAAGTCAACAATTGCCTCCCTTCTTACTCAGCAGTATGGGCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGCTGAGACATCCAGAGGAGATGGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 135848-133837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDFJ01000050.1 Streptococcus sp. AC15 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 135847 36 100.0 30 .................................... CTTGTTCTAGAATACACTCTTTTAACGATT 135781 36 100.0 30 .................................... GGATATTCGTAATCATATAGTTGAAGAAGT 135715 36 100.0 30 .................................... TCGTTATGGCAAATATCAAGTATTACGTAT 135649 36 100.0 30 .................................... CAGAGCGGTCAGCTGTTTACATTTCTTTAT 135583 36 100.0 30 .................................... TGAAACATTCAAGGTTAAATGTGATAACTG 135517 36 100.0 30 .................................... ATAAACTTTTTAGCATAAGTCTGGGCAAGA 135451 36 100.0 30 .................................... CCAAAGAGGAAACCAATACCTTTAAGTACA 135385 36 100.0 30 .................................... TAACTTTACAATATCAAAAATATTGCAATG 135319 36 100.0 30 .................................... AATAAATTTGAATTAAATGTATTACGTTCT 135253 36 100.0 30 .................................... ACGTCATGAGTTAGAAAGAGTATATGCAGT 135187 36 100.0 29 .................................... TGAATACAACAGTCAAGCTGCAAATCCGG 135122 36 100.0 30 .................................... ATTATTCATTTATTCAGAAGTTCATTAGTT 135056 36 100.0 30 .................................... CGATTGGGTCTACTTTGTCCGCACGTGATT 134990 36 100.0 30 .................................... CCGTTTTGTGAATAATAAACTGGTTAACAT 134924 36 100.0 29 .................................... CTACAACTCTTTGTTCATCAAATATAAAT 134859 36 100.0 30 .................................... TCAATGGTTCACCGACCGATACAACGACAT 134793 36 100.0 29 .................................... AAACAGAAAAACGGTTAGGAGTATAATAT 134728 36 100.0 30 .................................... ATTTCATTTCGAAAAATAGGTAGCCGATGT 134662 36 100.0 30 .................................... ACTCTAATAGGACTAGTCCCTTCAGCATAT 134596 36 100.0 30 .................................... ACTTTGATGGTTCTATTATACCACCGTTCC 134530 36 100.0 30 .................................... AATGAGTACCTTATTATTTATATTGTTTTA 134464 36 100.0 30 .................................... GTGACGTTTATCGCTATGAAAATAAAGTTT 134398 36 100.0 30 .................................... CCTACTGCCGCTTGTGCAATAGTAGGAAGC 134332 36 100.0 30 .................................... ATTCTGGTATGTCTGATAATTGGATCATGA 134266 36 100.0 30 .................................... CCTGTATCTTTTGAACGTTATTTTGACAAA 134200 36 100.0 30 .................................... CTCGCAATCTCTTTGTGTCGTTCTTTATCA 134134 36 100.0 29 .................................... GATGCCCATAATTTCATATTAAAATCGCA 134069 36 100.0 29 .................................... ACGAAATGGGAGCCTATGACCGTTACGAG 134004 36 100.0 30 .................................... TAATATCAAAATAGCTTCTCATGCTTCATC 133938 36 100.0 30 .................................... TTGTAAATAATAAAGGAGGGCTTGAAGCCA 133872 36 97.2 0 ................................C... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : ACGATTACTTAAGTTATTCCTCATTTGTAAAATGTTGTGAGCAATTACAGAGAATGGCCGACAATTACAGTAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTAGTGGTCAATATCCTACTAATGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATAGTAACCTTAAAAATTATGAACAGTTTATACCATTATAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAACTTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : TACATTAGGAATTGTTTGATGTAAAAGAATTGTAATCTAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGCTGAAATGGTTTATAATGAAAAGTAGCAAGTATATTAGGAGGCCGTCTAATGGAGAGAAAAATTAAAAAATCGGTAGTTGCGACCGGTTTAGCTGCAACCACTATTATTTCAGGCAGTTTATCACATCAAGTAAATGCCGAAGAAGTAAAAACACAATCTACTGAGCCAAAGACATCTGAAAAAATCACCAAACCAGTTACAGAAACAGATGTTCAATCAGCAAAGATGCAAGCCGATGCTGCAAAGGTTCAGACAGATGCTCAGCAAAAAGTTGTAGAGCAAGTCAAAGGAGATGTAAATACTTCAAAGGACGCGGTAGCAGATAGCGAAAAAGCTGTTGCAAATGCTGAAGCAGAAAAGAAAGAAGCAACTCCAGAAGTTATTGAAACCGCAAAAGAAGAAGTGGCGACATCAGAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //