Array 1 59610-60303 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITQ01000019.1 Clostridium coskatii strain PS02 scaffold16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 59610 30 73.3 36 GCAAGTG.....G................. ACATACAATTGGTCAACAATTGGATGCAGGGGTATA 59676 30 100.0 38 .............................. TTTCATACTGATAATTCGCCAGTTGTTTTTGTCTTTCT 59744 30 100.0 37 .............................. ACAAGAAATACATCTGCAGCATGTTGTAAATCAACTC 59811 30 100.0 37 .............................. AATTTGTTGCAAGAACAAAATAATCAGACTTGGCAAA 59878 30 100.0 36 .............................. GCCCATTAAGTGATTCAGCTAACTATATGCCAAATA 59944 30 100.0 36 .............................. ACGAGCTTCTATAAAAGGAAGTGAGATACTAATGTT 60010 30 100.0 36 .............................. CATTAGAAAAAGGGAATAGAAGTGTTTTAGATTATG 60076 30 100.0 35 .............................. TTTCAAAAAGCAATAGATGATGGATATACAAATTT 60141 30 100.0 36 .............................. GCGTAACTAATAATTCTACTGCGGTTACAGGATCAA 60207 30 100.0 37 .............................. TTTATATACTTACAACTAAATAAATTACAATAATTTA 60274 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 97.6 36 ATTTAAATACATCTCATGTTGAGGTTCAAC # Left flank : TCATTCTTTCATCTCCCAAAAATAATTTTCACTGTCTTCATTATATTTTATAAAACCATTCTTTTGCAAAACTTTTTGGGATGCAGTACGAATCAGATAACCTCCAAAATTTTTCAGAATTAAAAAATTGCCTTCAGCTTTCTGCCAAAGACGATTTTAATTATTTCATTTTTGATAAGATTTTTTGTATGGTTTTAGGAGATAGATAGTATGTTTCAGAAAGGTAGTCTATAGATGCTCCCTTTCTGTATTTGCTGTAGATTTCAAGGTTTCTGTAAAATAATATATTTCTGCTGCCATTTTTCTCTCCCCAGGTTTTTCTGTTGCATTGTTTTCTCGGTATATAGATATATTCGCCGTCAATATAATCCTGAATTTGAGATACAAGTTCTGATGGTAATACATCTGCTGCTTTTTTATAGCCCAATTCCGTGCTCCTCCTAATATATATTTTTAGGATTGTGCATAGGCTAATACATCACTTATATAAATAATTTTCT # Right flank : CCACAGTAAAATAGCCATTCCTTATTCTCATTATAACCCTAAAGCCCTTAACAATAAAGGCATCCGCTGAAAATTTTCCAACCGTTTTTGAATTTTCATAAACTTATAAAAAAAGTGCCTCAATCCATTACATATCAATGCATTGAAGCACTTCAAAGCTTCAAAGAGGTTGGAAAAATCAAAGTATTAAATTTTCAGTATTATTTTCATTTATCCCTAAAGTATCCTCCTCAAAACAGCTGTCATTCATAAGCTTTATTATTGTGACAAAATCCTTATCCTTTATAATCTTATTTAATTCACTCTTCAACTTTATCATTTTAGAAGTCGTTATAGCGCCTCTAAAAACAGAATTCTGATGGTGGTGGAAATATTTTTTGCATACTTTAAATACCTTATTTACCCTTTTCTCATTTACATCATAAAACACAAAAGCATAGTTGAAATTAAAATTTTTCCCCATAAAGCTCCTCCAATTATCACATCATATTTTTCAGGCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTGAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 69140-69834 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITQ01000019.1 Clostridium coskatii strain PS02 scaffold16, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 69140 30 100.0 36 .............................. TTTTCTGTTGTTGTCCATAATTGCATTGCTAATTTT 69206 30 100.0 36 .............................. GAAATTGAAAGAAGGAAATCAGGAAAGCGTTATTGA 69272 30 100.0 36 .............................. ACCACGGATAGTAGGAATGGTAAAAGCTACATATGA 69338 30 100.0 36 .............................. TAAATTTGGGGGATATGAAAATGAAAATAAAAACTT 69404 30 100.0 37 .............................. TAATTCAAAAAGCAACACAAGGACTTACAAAAAATGA 69471 30 100.0 36 .............................. ATCATCATAAGGTCCAAAACTTCTATAATATAAATA 69537 30 100.0 40 .............................. ACTACAAATACGGGTTTAGTCTGTTCTATATGAACCTTTA 69607 30 100.0 36 .............................. GAACTATTCAGAACTATAAGTACACAGTTCAGAACC 69673 30 100.0 36 .............................. TGATTTCACTGTTTGTGGGTATACCGCTGGAACAGC 69739 30 100.0 36 .............................. AGAGTAAGTATTATCATAATACTGTGTATTCACTGC 69805 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 100.0 37 ATTTAAATACATCTCATGTTAAGGTTCAAC # Left flank : TTAAGTTCATAATATCTCATAAAATCACGATCCTTAATAAATGTTTATGATATACCAAATATACAGATTGGTTTACTAGTAAAAGTTATTAAAAATGTGTTTTTATAACTTTCACATTTGTTACATATTCCAATCTAATTATACTATTATTTATCAATTTTTGTAATATATTTTATAAAATTACAATCATTTTCATATAGCAACCTAACTATACTAATTGCCTTACTAAGGCTTACTCATATTGCACCACTTTTTTAATATACTTATTGATGAATTTAATATAATTAAATCAAACTAATAGTGAAGTTTACTGGCCTCTTATTTCTAATTTTTAAAAATAATTATTATAAATAACATAAAATTATAACAATAAAACAAAAATCTCCATATAAAACTATATTGGAGACATTGATTACACTACATGTATGTTTCAATATTTATAAATTTAAACATCGTATGTTACGGTTAAAATATTTTTAAATAAGCAAAATACTTATTCA # Right flank : CCACAGTAAAATAGCCATTTCTTATTTTCATTATAGTCCTAAAACCCTTAATAATAAAGTCATCAACTGAAAATCTTCCAACCGTTTTTTCAATTTTCACAAACTCAGCCAAAAAGTGCCTCAATCCATTACACATCAATGCATTGAAGTACATTCTATCTTCAAAGAGGTTGGAAAAAATCTATCCCGGATATTTAGTTTAAAACACACCATAAGTTTTTGCCACAATTCTCTAACCATTTTTTAATTTCAAATAAAAAAGCATCCTTAAAGCTCACTTTCAAAACTTTAAAGATACTTTATTATTAAATTCCATATCTTTTCAAATCTTTTATGGTTTCTATATCAAATATGTCCTCTATAATTGAATTTAGGCTGTCACTGTCTAATAATTTTACCTTTTCTATCACAGGTTCATCTACATTCTTAAACTTTTTGTTTAGTAATTTTATAACTCTTTCAATATCCTTCAACCTAGATTGCTCTCTCTCTTCTTCTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 71581-71287 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITQ01000019.1 Clostridium coskatii strain PS02 scaffold16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 71580 30 100.0 36 .............................. ATGACAAAGGAAGAAGAAAACGAAAGGCTTAAGGGA 71514 30 100.0 35 .............................. GTAAAACTTCTTTGTGTTGCTGCTTTAGGATTAGT 71449 30 100.0 35 .............................. TGTAATGAATAAAAGAATTAGTATGTTCAATTCTA 71384 30 100.0 36 .............................. TCTCTTTCAAATAGTTTTTTCTTAACCGTTTGGCTG 71318 30 80.0 0 ............T...GC..A.T...G... | C,C [71292,71299] ========== ====== ====== ====== ============================== ==================================== ================== 5 30 96.0 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : CTTTTCTTAACGCAATACATCCTACAGAATTATTGTCAATACTTGCAATATATAATCTTCCTTCTGGCAAACCATACTTTTCTGCTATTCCATTTATTTCATCACTATAATGCTGCGATTTCAAACACGCAATAACTTCTTCACCTTCCGCTAATATACTTTCCGTATATTCTTTAAATAATTGGATTAATTCTTCTTTTTCCTTATATGCCAATCTAATCGTTACATCCATATTGGGTACCTCCCTAAATTACTATTTATCTGTATGCTGTACAAATAAATTATACTATTTTATACAATATGTTACTATATTTTGTTGAGTATTTTCCAACCAATTTGAGGGATATAGGTGCTTTAAGCCATTTGAATTCAATGGATGAGGGTACTTTTTTTATTGAGTTTGTGAAAATTGAAAAATGGTTGGAAAATTTTCAGCGGATGCCTTTATTATTAAGGGTTTTAGGAATATAATGAAAATAGAGAATGGCTATTTTACTGTG # Right flank : AAAAATAATAATCTGTAAATATTTAAAAATATGTTGGATAGAAAAACATAAATGCTTTATAATTAGTACTAAGAAGGATAAACATAAGAGGATGTGGATGAGATTTGGCAAAGAAACACGATTTTGATGCAGCGTGGAAATCAATTTTGGAAGCCTTTGAAGTAGAAATAGTAGAACTGCTTTTCCCGGAGATATTTAAAAATATAGCATGGGAATATGGAACAGAATCTTTAGATAAAGAACTTCAAGAAATACAAAGGGAAATTTTTGATAGAGATAGCAGTGAAAAGGTAATATCGGATAAAATAATAAAGGTAAAATTAAAAAATAATAAGAGTAAAATATTGTTTATACATGTGGAAGTACAAAGTTATGCCAGCTGTGATGAAGTATTTGGAGAGAGAATGTTCAGATATTTCTATAGAATCTGGGATAAATTCAGGTATAGGTATGAGGACAAATCGGAAATAGTGGCAGCAGCGATATATACATATAAGGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 86101-85143 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITQ01000019.1 Clostridium coskatii strain PS02 scaffold16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 86100 30 100.0 36 .............................. AATGAAACAAGCTAATGAGGACGGACCAAATTTGGA 86034 30 100.0 36 .............................. TCAACGCCTTCCATCCAATAATCCATGGATTTTCCA 85968 30 100.0 36 .............................. GAGGAATTATGCAGTGTTAACGGTGAGATAGCTGAT 85902 30 100.0 35 .............................. AAAGAAAAATGTAGCGTTTTTGTTTACTCAGCATG 85837 30 100.0 36 .............................. CAGCAAATAACTGACGATGCTGATGGTTCTAAAAGG 85771 30 100.0 36 .............................. TTAATAATGATACTGCTGCTATTTGTGGAGGCACTG 85705 30 100.0 36 .............................. CTCCTTAACTATTGTGTTTTCACAGGTTTCGTTGAA 85639 30 100.0 36 .............................. TTTGTTTTTACATCATATTCTTTAAAAAACGATTTT 85573 30 100.0 36 .............................. TAGTTGCGTATAGATGTATCAGGAACTATCCGTAAT 85507 30 100.0 38 .............................. TAATAAAACTTTAAATACATCCACTTTTTCTAGATATT 85439 30 100.0 36 .............................. CATCTTTTATGTCGCTTAGTGCTGATTCTATTTTTT 85373 30 100.0 37 .............................. AGGTGCAACATCTAATACAGAATATACAAAATTTACT 85306 30 100.0 37 .............................. TATAATCCCTTCCTTATAAATTTGTATTTCCGCATAA 85239 30 100.0 35 .............................. TTCTTGGTTATAATTGTATTAGATGCATTAGGACC 85174 30 83.3 0 ...............A....C..AA....A | AG [85147] ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.9 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : ACCGTTATATTTGTTTTTGATAATAATAAATTAATTGGTTTTGGTCGTGCAATTTCAGATGGAGTTTATCAGGCTGCAATTTATGATGTAGCAGTATTACCTGAATATCAAGGTAAAAATATTGGAAGAACAATTGTTAATGGTATTTTAAATTGTATTCCACAGTGTAATTTTATATTGTATGCTTCACCTGGTAAAGAAGCTTTTTATGAAAAATTAAGTTTTAGAAAAATGAAAACAGGAATGGCATTGTTTTGCAATAAAGAAAAAATGCAGACAAAAGGATTTATTGAATAGATCCTGGCAAGTGAAAGTCAGAAACGTTTTTCCAACCAATTTGCAAAGCACAAGTGCCTTAATCCGTTTAAATTGAATGGATGAGGGCACTTTTTTGATTGAATGTAGAAAAGTGAAAAATGGTTGGAAAAATTTCAGCAGATGCCTTTATTATTAAGGGCTTTAGAGATATAATGAAAATAAGAAGTGGCTATTTTACTGTG # Right flank : GATGACAGTAAATATGAACTTTAGTATGATAGAATATATGGAATAAAATGTTTATCATATATAAATGGAGGAATGATGCTATGGGAGAATTGTCCACCTTGCCCAATATTGGAAAAACAGTTGAACAACAATTAAATCAAGTTGGGATAGAAACAATAGAACAATTAACTGATATCGGAAGCAGGGAAGCTTGGTCTAGAATAAAAAGCATTGATCATTCTGCGTGTATAAATAGGTTGTATGCTTTGGAGGGTGCCATAGAGGGAATTAGATGGCATAATCTTTCAGAAGGAGTAAAAGAAGAATTGAAAGATTTTTACAATACATTTAAATAATTGTGCAATTAGTTGGATGTATGAAAAATTGATTATTGACTGATGCCTTGGGTACTGGTTTATACTATGAATAGTATCTAAGGGGCAATTTTTATATGTTATCTATAGTATGTAGTATATATAATCCTTAATACAACAAGTAAATATAAGAAGTAATGTAGAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //