Array 1 418-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOM01000007.1 Actinobacillus pleuropneumoniae serovar 13 str. N273 contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 417 28 100.0 32 ............................ TCAAAGCGAAACGGATTGCCATGAATATCTAA 357 28 100.0 32 ............................ TTCCACGATGATTTAGCTGCTTTGATTAAAGC 297 28 100.0 32 ............................ TTTGATTTGAAACTGGTCGAGAACGCTAAAGA 237 28 100.0 32 ............................ AAACAAGAACTACAAGAATATTTTGACTCACT 177 28 100.0 32 ............................ TTTGAATCGAAACCAAACTTATTTTTAATCTT 117 28 100.0 32 ............................ GAACGTAAAATCAATATGTGCTATGACCTATT 57 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGCAATTTTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAATCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : AATATATTGAAACAGAGGTAAAGACGTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7232-6845 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOM01000006.1 Actinobacillus pleuropneumoniae serovar 13 str. N273 contig00263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7231 28 100.0 32 ............................ AACGAAGAAAGCGAAGAATACACGCCAATCCA 7171 28 100.0 32 ............................ GCCCGAACAAGATTCAATACTCTATTGATACC 7111 28 100.0 32 ............................ TTTAAATGGAAAAAAGTCCTCTTTCTGACAAT 7051 28 100.0 32 ............................ TTTGAGAAAAAGGAGAAAATGAAATCTCAAGC 6991 28 100.0 32 ............................ AATGTTGAAAACACTCGGTTGGTGGGGGAAAA 6931 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 6871 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CAAGACCAAGATTGCAATTACTGGAAAAACG # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAAATCGGTTGTGACTTTTTTAGCCCTCAAAGTGAATATCGCCCCGTCGAATATCTACAGCAATGGTGTCGCTTTTGGTTTGACGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //