Array 1 41249-39029 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDN01000023.1 Bifidobacterium longum strain DPC6323 contig0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 41248 36 100.0 28 .................................... GCGGTTTGAGCAACGGCACCGTGCTTCA 41184 36 100.0 28 .................................... TGTTGGACAACAGGGTTTCGAGCGATGC 41120 36 100.0 28 .................................... GTGAGCATACGGCTGATCGCCGGATTTA 41056 36 100.0 28 .................................... ATATGGCCTCGCACCACATAACATGAAC 40992 36 100.0 29 .................................... GCGAACCTCACTGGAAACGACGGCGAAGC 40927 36 100.0 28 .................................... TTTTGCTTGCGCATGTTTCACCTCCCTA 40863 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 40799 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 40735 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 40670 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 40606 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 40542 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 40478 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 40414 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 40350 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 40286 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 40222 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 40158 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 40094 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 40029 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 39965 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 39901 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 39836 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 39772 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 39708 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 39644 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 39579 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 39514 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 39449 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 39385 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 39320 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 39256 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 39192 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 39128 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 39064 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 35 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 75559-75903 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDN01000027.1 Bifidobacterium longum strain DPC6323 contig0027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 75559 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 75625 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [75631] 75709 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 75769 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [75817] 75817 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 75874 27 81.5 0 ......A.......C.....C....CG | GC,C [75892,75896] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTGCG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //