Array 1 395937-397513 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049228.1 Lactobacillus iners strain C0210C1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================= ================== 395937 29 96.6 32 ............................C AATTGAAAGAGAAAAGCGACGGCGAAGACTGG 395998 29 100.0 32 ............................. ATAGTCAAAAGCCAGTCACCTCTGCAGCAGTA 396059 29 100.0 32 ............................. CTGCGCTGCACCTTTCGGGTTTCGGTAAGCTA 396120 29 96.6 32 ............................C GGCTGTTTATTTTTTTATTCTTAACTCTTTTA 396181 29 100.0 33 ............................. TGTAAAGAGAAAAGGAAAGAGGAAAAGAAAATG 396243 29 100.0 34 ............................. AATTCAAATCCTTCTTTTAACAATTTACACATAA 396306 29 100.0 32 ............................. GCGAGCTAGAAGATAAAATCAATGAATTTTTT 396367 29 96.6 32 ............................C TCATTTTGTGTATCTTTTTTAGTTTCTTCAAG 396428 29 100.0 32 ............................. GGTTTTTAGCTAAGGGCAACAAAGATATTTCA 396489 29 100.0 32 ............................. GCTCTAATTTCGTTGTTTTCAAAATTGAATTT 396550 29 100.0 32 ............................. ATAGCTTGCTTGCACTGCACCTTTAGCGAGTG 396611 29 96.6 33 ............................C TATGGGAAGTTTTTACTTTTCTATGTCAATGCG 396673 29 96.6 32 ............................C AGCGTTATTATATAAGTATAAAGAGAAAAGGA 396734 29 100.0 32 ............................. GGAAAACAACAATGCGGACTGGAAAGGCAGAT 396795 29 100.0 32 ............................. CAGCAAAGTAGCAAACGTATGACGAAAACCAT 396856 29 100.0 32 ............................. AGACGCACTTACGCAAAGTATGACTTACTTTT 396917 29 100.0 32 ............................. ACACACTATGAGCATGAGTGTGATTAGCTTCA 396978 29 96.6 32 ............................C GATCAATTTTTGGAAAGCGGGGAGTATATAGG 397039 29 100.0 32 ............................. GCTTGTGCTAAACCTTGTACATTTTTCATCAA 397100 29 100.0 32 ............................. ACTTGCGTCGGTATGTAGCCCGTTCCAGTTAT 397161 29 100.0 32 ............................. GACCAACTAAAAGATTTAGCAGGCATGGTAAA 397222 29 96.6 32 ............................G CTACCGAGGGAGTAAATTATGTAAACCCGTCA 397283 29 100.0 33 ............................. CAACGCTTACTTCAAAGTAATAAAGTCACTTTA 397345 29 82.8 109 .....................AC...TTA AAAACACTTCCAAATTTTTATTTACAAAATTTAGGCAATATATCATAATATGTTTAACTTAGGAGTAAGCATGTTATTTTTAGTTTTGGCTTGCTTTTTTCTTAATATT T [397365] 397484 29 69.0 0 ...C..T...T.......T..A.A..AAA | T [397501] ========== ====== ====== ====== ============================= ============================================================================================================= ================== 25 29 97.1 35 GTATTTCCCGCACATGCGGGGGTGATCCT # Left flank : GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAACTAAAAAATGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTGTGCACGTTTATTGGAGATAAAGCATTAGTTGGCTATAATGTTAATTTTGATATCAGGTTCATCAATGAGGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATACGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTATAAGTTGGATACAGTATTAAGTGAATACGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACGACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATTGAAAATTCAAAAGTGAATGAAAAAATGGTATCCTTAAATTGCAGGTAGCGTCATAGATGGATCTTTTAGT # Right flank : AGTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAACTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCAATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAACATAGTCAAGCCCCTTTGACAGAAGAAGAGAAAAAATTTTATGGGGTAAAATAATTTTTGCCAAGTACTCTCTATTTTTATCGAGTATTGCTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTATAGAATACATATCGAAATAAGTGCTTTTTTGTGATTTGAAATTTTTTATTTAGAATTTTTAGTTAATTTATTTTTGATAGATAATATGATGATAGGCAAAATTGAAATAGCAATGATAGCAATGATCAGCAAGGAAAAATGATGCTGTACAGCAGGAATATTACCGAATAAAAAGCCACAGATTGAAAATA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //