Array 1 50185-50482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEUH010000010.1 Neisseria elongata strain AR-0945 NODE_10_length_89536_cov_75.833775, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 50185 32 100.0 35 ................................ TGGAGCAACGCAATGAGTTTGCACACTATGGAAGC 50252 32 100.0 33 ................................ AGCGCCTCTCCCTGATTGCCGTTTGTAAAACAG 50317 32 90.6 36 T...........G...A............... TTAAAGCCGGTTATCAGGGCTTTAAGGGCGTCCGGG 50385 32 90.6 34 ......A.....G........A.......... TCTGAAGTGGCGTGAAAATGTATTGGCGGCAAGT 50451 32 78.1 0 GT.A............A.....A.A..A.... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 91.9 35 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGAGGTTCGGCGGCTTGGTTAAGTTTCTCGTCAAATTGGGCTTGGGCTTTTTTTAAAGCTTGGCAGATGTAGTCGTTTTCAGGGTTTAATTTAAAGAAAAGAACTTCGCGCACTTCGCGGCTCATGCTTTTTAAAAGGTTTGCTTTCATTTTTTTACTCCTATCCGCCCGTAGGCGGTCAGTTGGTTAATCACGTTTTCGGCAGGTCTTGTTGTCTGTCCATGTGCGTATAATACTACTTTAAAAGTAGTAATGCAAGTATTATTTGAGATTTTTTCTACCACATTGATTTGTAATAATAAATTTTTTCTAACTGACTCCCTGATTATAATAATGTGTTCCGCAAAAATTTTGCGGTCTTTGATTTTATTGCATAAAAAAACAGCCAAAAACGCATAGTTGCGGAACGAAAAACCTACATTAAGTATTGGTAATACTGGATTCGCTGCGTTCTGTGTTGAAACTCTCGCCCCTCTTAGCCGCCACCCTGAACCTGCCCGT # Right flank : CGGTCGCCACCTCCTGTTTCGAAGAGGTGTCTTGATCTACGGCGTTCAAACAGCCATAGCCAACAAAATATCCTTGCTAAATGATCTGCTGTTTTGTCAATATTTGAGGCGGTGCGTATAATCCCCGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACCAAAGTAAAGGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTACGCGTCTGCCAGCCCAATCAAGAGCATATGGAGATGCCGTCCCTGCATTCGCTGGAACACCTGATGGCCGAATTGTCGCGTAATCATTCAGATAAAATCGTGGACATCAGCCCTATGGGTTGTCAGACTGGTTTCTATATCGCCCTGTTGAACATGGGTGATTATGATGAGGTTTTGCAACTGATTGAAAATACATTGAAAGAT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 107963-107333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEUH010000006.1 Neisseria elongata strain AR-0945 NODE_6_length_141330_cov_92.084623, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 107962 36 97.2 30 ...T................................ TTATTCGCGGCAGGTTTGGAATCAGCCTCT 107896 36 100.0 30 .................................... CGGCTTTGGTTCGGGCTTTTTGCCGCAGGG 107830 36 100.0 30 .................................... ATTTGGGATATTCATTGGAGAACCCATTGG 107764 36 100.0 30 .................................... ACTTTGGCAAAGCGGACAACAGCAGTATCC 107698 36 100.0 30 .................................... TCTTCGACAACGCTGCACACTCCTCTTCGG 107632 36 100.0 30 .................................... TTTCCAGTTGGAAGGGATTAAAGCCCGTCG 107566 36 100.0 30 .................................... CTTGCCGTAGGCGTTACGCTGAATCTCTAG 107500 36 100.0 30 .................................... TTAACGGCCAAACAGGCGCATAACGAGACG 107434 36 100.0 30 .................................... CTGAAGCAATGTATCTACGCGGTCAAATTG 107368 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 GCTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CGAACGCAGCGGCAAAGATTTGGATTGGGCGCAACAAGTGCGCAACACCCTGGGCCGGCCGGTACGCCCCTTCATGCTGAACTACCTGCGCAAACAAGGCTTTGCCAAACGCTAAACGAAACTGCGGCCTTAAGGGCTGCCACTGCAAACGGCGGATTCCACAGGTTTTCGGCTTGGAATCCGCCGTTCGCCATCCACGATAATCGGTTTCACCTCATGAAAAATCTTCTTCCTTTATATTAAGATAATCAGCCTCACTCCCCATGAGACCTTTGCAAAAAAGCCCTTCCCCCGACAACCGAAACCCAAACACAGGTTTTCGGCTGTTTTCGCCCCTAATTGCGCCTAATTTTACCCAAATACCCCCTTAATCTCCCTTGGATACCTGATTAATCAGGCATCCGGCCGCCTTTTAGGCGGCAACAGGCACACTTAGCCTGTTAGCCGCTTTCAACAGGTTCAAACACATCGCCTTCAACCGCCTTTACACGATTTGAATC # Right flank : TCCCTCAGCGGGGAATCCTTATTTTACAAGGATTCCCCGCTTTCTTTTGTCTAAAAAACGGAGATTAGAACAGCAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTGAGTTCGCCTAAAAGCAGTTTCATGGTGGCAAACTGCTTTTCCGTTACCTCCAAACAGCGTATCGAGCCTTCTTGCGGCAAGTTAGCGCATAGTCTGTTGTGGTGTTTCTGCAACGCATCTCTGCCTTTGACAATCCGGCTGTACACGGAAAGTTGCAGCATTTGATAGCCGTCTTTCAATAGGAAATGTCGGAATTGGTTGGCGGCTTTGCGCTTGGCAACGGTGGTAACCGGCAGGTCGAAAAAGACGATGATCCGCATAAATTTTGCCTCACTCATATTGATATTCTTTCAAAGGCAGGATTTGGGGCAGCTTCAGCAGTTTGGCGTTTTTTGCAACGAGACTTGGCTGGAATGAAGCAATCATTTTGTCTATGGCGGCCAGTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //