Array 1 19220-18891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXK010000023.1 Erwinia amylovora strain 1686 Ea_1686_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19219 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19159 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19099 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19039 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18979 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18918 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30300-28683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXK010000023.1 Erwinia amylovora strain 1686 Ea_1686_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30299 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 30238 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 30177 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 30116 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 30055 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 29994 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 29933 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 29871 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 29810 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 29749 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 29688 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 29627 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 29566 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 29505 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 29444 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29383 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29322 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29260 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29199 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29138 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29077 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29016 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28955 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28894 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28833 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28772 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 28711 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCTCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 43370-41207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXK010000023.1 Erwinia amylovora strain 1686 Ea_1686_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43369 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 43308 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 43247 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 43186 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 43125 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 43064 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 43003 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 42942 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 42881 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 42820 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 42759 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 42698 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 42637 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 42576 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 42515 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 42454 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 42393 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 42332 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 42271 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 42210 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 42149 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 42088 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 42027 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 41966 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 41905 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 41844 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 41783 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 41722 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 41661 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 41600 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 41539 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 41478 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 41417 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 41356 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 41295 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 41234 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //