Array 1 108488-105527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBS010000008.1 Salmonella enterica strain L3-11 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108487 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108426 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108365 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108304 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108243 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108182 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 108121 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 108060 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 107999 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 107938 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 107877 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 107816 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 107755 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107694 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107633 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107572 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107511 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107450 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107389 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107328 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107267 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107206 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 107144 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 107083 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 107022 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 106961 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 106900 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 106839 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 106778 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 106717 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106656 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106595 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106534 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106473 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106412 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106351 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106290 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106228 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 106167 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 106106 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 106045 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 105984 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 105923 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 105862 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 105801 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 105740 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105678 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105617 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105556 29 96.6 0 ............T................ | A [105529] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126120-124747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBS010000008.1 Salmonella enterica strain L3-11 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126119 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 126058 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 125997 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 125936 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 125875 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 125814 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 125752 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125691 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125630 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125569 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125508 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125447 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125386 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125324 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125263 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125202 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 125140 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 125079 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 125018 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 124957 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 124896 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 124835 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124774 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //