Array 1 757051-758431 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB205935.1 Anoxybacillus flavithermus TNO-09.006 chrAF6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 757051 30 100.0 35 .............................. AACTTCGAAACAACATGACCCCTTTTGAGTTTTGA 757116 30 100.0 39 .............................. GGCAAAAAAATCGGTGGGTTTTTCTCGTCGCTTGGCAAG 757185 30 100.0 37 .............................. AAATGTGTTGACATGTAGACACACGTGTGGTATTCTA 757252 30 100.0 40 .............................. TTTCGGTGACGCTTCTTCGCGTGCTCAAATACGCATGTAT 757322 30 100.0 38 .............................. TTTATTTCCTTTTTTGCTGTTTTTTTAGTTCCTTTTGG 757390 30 100.0 40 .............................. TAAAATTGTCGCAACGTCTCAAGTTTTTACTCGCGTTGCT 757460 30 100.0 37 .............................. ACATTCATCACAGTTCAAGCATTCCACTTGACCACAA 757527 30 100.0 41 .............................. TTTACCTGTTGAAGATTTTAAGAATTTAAAAATTAAATCTA 757598 30 100.0 35 .............................. TTCATTTAAGCTAATACTCTTGCGCGCTTGTTTTT 757663 30 100.0 35 .............................. AAGTATTTGTGTACTTTTTCAATAGCAGCTAATCT 757728 30 100.0 35 .............................. TACGTTCCGTACCCGTGGAAATCGCCGATATGCTC 757793 30 100.0 38 .............................. AAGAGATTTCCATTTCCGATGGGTCTACGAGTGGGCAA 757861 30 100.0 41 .............................. CTCCAATACTTGAAGCCCCTCCATTCATTCGCCAGTTCCCC 757932 30 100.0 39 .............................. TGAGAATAATAAGCTATTTCCTCAGCGCTTTCTCCACGT 758001 30 100.0 38 .............................. GTCGATAAATACTGTAAATATTCCAGCGCTTGTAAAGA 758069 30 100.0 39 .............................. TCTAAATATTCGCCCGTCGATGTTTCTCCGAACGCAAGG 758138 30 100.0 36 .............................. TATAACTTCTTTTTTTCGCTGGGTGTGTTGGCTCTT 758204 30 100.0 38 .............................. ATGCTTTCGGATGCTATCCATTATCTGGCCACTAAAAC 758272 30 100.0 36 .............................. ATGTTTGTAAATTTTGACGCAGTTTCAGCCGAATGC 758338 30 96.7 34 .............................T AATGGAATCACAATGTTGCCTCCTGCTAGATAAA 758402 30 80.0 0 A.......................A.CGTT | ========== ====== ====== ====== ============================== ========================================= ================== 21 30 98.9 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GAAGCGATCGATGCAACAAAGCGCCCGCTCGTAATCGGAGGTGTATTCGTACTTATGCTTGCATCGATCATTTTCTCTCACCGCGCCAACACATATTTGCGCAAATTAGACAATGAACAGTAAATTCCCCTGTTTTCGTACAAAGAAAAAACATGTAAAATAAAAGAAAATGGGTAAAGGGGGAATAAACGATGATGTGGATGATTACAGGTCTAGTCATTACAGCTGTCATCGGTTTTGTTATTATCGCGGAAGTGAACGCCGAAGCATAAAACAGTCTCTAAACAGGAGACTGTTTTTAATAAAATTTATTTGTGATAAACTTCACAACTGTCGTCGACCTCCAATCGTGCAAAAACTTCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGCTGTATCAACGGACATAGACTATTGACTGAATTTTCAAATGTATGTATAATGATGTTGTATAGCTTTTCCATGTGTTGATATATCAACGCTTTTTTGGG # Right flank : TTTTTGTATTGAAAAGCAGGGATGTTTATGCCCTGCTTTTATTTTTTTGTTACAACTTTGTTACAACTTTCAGAAAAGTATTGCGCAAAAACTAGTTCGTTTGTATCATCAGTAATATGAGGATATTTTTTGAAAAGGTGGATAAGGGATGAAACTACTAACATTTCTCGGCGCGAATGACTATCGTGAAACAACGTATCGTTTTCGGGAGCGTGTGCATACGGCAAAGTTTTTTCTATCTGTCCTTATTCAAGAACTGCAACCAGGTGAAATATACGTATTTATGACAGATGGGGCACGAGAGAAAAACGAAGCACCGTTGCTTGACGAATTAAACCGATACGGCGTAGATGAAAAGAAAGTGCATGCTGTATGCATTCCCGATGGGCAAACAGAAGAAGATTTATGGAATATTTTTTCTGTTATTGCTGATCATGTGTATGAACATGATGAAATCGTCCTTGATATTACGCACGGATTTCGGACGTTGCCGCTCGTTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 778631-779668 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB205935.1 Anoxybacillus flavithermus TNO-09.006 chrAF6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 778631 30 100.0 37 .............................. TAGTTGTTGTAAGTGATTTTCAAATACTGATAATGTA 778698 30 100.0 36 .............................. TGGTAAGCAGGGCGCTGGTAAGACTATGGCGATGGT 778764 30 100.0 38 .............................. ATGTAATATGGAATAGGTTGCCCAGATTCTAAATACTC 778832 30 100.0 38 .............................. TCATCATGTTTGAACGATTTTTTACTTTCGCCGTCGAG 778900 30 100.0 38 .............................. CAAAAAACATTACAGGTATGGTGGTATCGCGGTTTTTT 778968 30 100.0 39 .............................. AGAAGGCTAGACACTTCGAGGAGATTTCCATTTCCGATG 779037 30 100.0 36 .............................. TTGCTAATAGTTCCCGAAAAAATCCATTTTAAAGAA 779103 30 100.0 36 .............................. TGCGACGACCCCCCACTCCTTAAAGACCTTTTAAAA 779169 30 100.0 36 .............................. TAAATGGTGAACGTCAAAACAGCGCGTCAAGCGAGC 779235 30 100.0 38 .............................. CGTAATAACATAATCAACAACGTTTCCGAAAGTTGAGC 779303 30 100.0 40 .............................. AATTGTCATATAGTTGTTTTATTTTTCGTTTGTGTTCGTC 779373 30 100.0 38 .............................. TCATCATCAACCGATTGAGCCATCTGTCTTTCTCTTCA 779441 30 100.0 35 .............................. TCGGAGATCATGATGGACATGGAGCGTGATTTTTG 779506 30 100.0 35 .............................. GAAGGAATAGTAATGTTTGTGTTGCCATAAGCGAC 779571 30 100.0 37 .............................. ACGACATTTGTTCAACTTTTTCATACCATATTTACAA 779638 30 86.7 0 ......................G...CC.T | T [779663] ========== ====== ====== ====== ============================== ======================================== ================== 16 30 99.2 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : AAGATGATTTAAAGCAATTATCCTTTACTTGTCCGCTTGTTTCCGATGAAAAAAATAAAGGACAATCAAGTCGATGAATTTGCTCGCTATTTAATCATTAACTACCATTTTGGAGTTCATATTATTCATCGTGATTATGTAAGAATATGCTATGAAATTCGCTCTAGAGATCGTCTTGTTTGGGTAAATATAGAAAACAAAAATAAGAATTCATGCACATATGTACAAGGTGATTTGAATTTATTTGACGAAGTGTACCATATTTATATTGAATTTGAACGTATCATAAGTAAAGTACTGTAAAATCTACTTATTGTGAATTTATTCACAACTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGTGATATCAATAAATACAGAGTATTGACTGAATTTTCGGATGGATATATAATAGAGTTGTATAGCTTTTCCATATGTTGATTTATCAACGCTTTTTTGG # Right flank : TTGTGATCAGTTTTATATTTACTTTGTAATGTTTTGTGTTAGGGGTAGTTTCCTTAATTTCCTACTAATCCTTTTTATTTTTTAGAGCGCTGGTCAGCTATCCTCAACCTCTGTTTTTATGTTACTTATTTCAAAGAGTTATATTAATTTAGAAGGAATATATTCCTTTTATGTCGTATTTTATGGTAGGTTAGTTTATTTAGAAACGAGGTGTGATTTTGCTAGCAGAAGCAGTTGTTCGAGTAGGCGAGTCGCTTGTGAGTAGTGATTTACCTTTAACGGAGCGTATTCGTTTGTTAACGGATGTAGATAATGAAGCTTGCAAGAATTTTTTTGAGCACGTCTGGGTTGTGGAATGCATAGAGGAACAAGTGAACGTTCGTTTGATGAGAATAGGAGAAAAGGTGAAGGAAGGTAAAAAAGAAACGTTTGTTGTTGATAGAGCTAAAAACGTTGCCTTTCCTATCATTTATCCTAATGGTGGGAATCCGCTAAATGCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 788657-789294 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB205935.1 Anoxybacillus flavithermus TNO-09.006 chrAF6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 788657 30 100.0 37 .............................. AAACGTTGGAAGAAGCTGAAGAGGAGATGTATGCAGC 788724 30 100.0 36 .............................. CCCAGATTCTCATCCTGCGTATCAACGCCGCGACCA 788790 30 100.0 38 .............................. ACTTTTATTGAACCCAGCGAAACAGATACAAACAAATG 788858 30 100.0 37 .............................. AAACAGGTGAAGGCAGTCCAACGAAGACTTCAGAGTC 788925 30 100.0 38 .............................. TAAAATGCCTTCTCACGGATCCGATAATACTTTGATTC 788993 30 100.0 36 .............................. GCGAATAGGATTGGAGCGCGATAGGTTCGGGTGTCC 789059 30 100.0 40 .............................. ATGCCACAGGGCGTATATCTGGCGAGACTGTTCATCTCAA 789129 30 100.0 39 .............................. GTCTAATTTCCGCCTACTCTTAAAGTCTTTTCGTCACCG 789198 30 100.0 37 .............................. AAAATTGGCTTCTCCGTTTGTAATGCTTCGGATGCTG 789265 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 10 30 100.0 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : ACGTTGGATGGAAAGAAAAAAACACAGTTTTTTGATCCGGACGACGAAGTGTTTTCACATTTAATAGAACGGAATTTTTATAACAAATATGAAGCATATTACGGTGTTCCACCAAGCGATCGGCTACTCATCGAACCTGTCGATGTTCGAAAATGCGATCGGGTCGTAACGAGCTTTAAAGGCTTTTACATTACAGCGTGGAAAGGGCGGTATAAGCTCATTTCTTCTCCGGAAAATTTAACGTTTTTGTACCGTGTAGGTATCGGTGGACGAAACTCACAAGGATTCGGCATGTTCCGCATCATAAAAGAAAAGTGAAACATTTCACAGCTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGTGATATCAATAAATACAGAGTATTGACTGAATTTTCGGATGGATATATAATAGAGTTGTATAGCTTTTCCATATGTTGATTTATCAACGCTTTTTTGGG # Right flank : CATAGTAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTTGTTCGGAACAGCTTTTTTGTTGTCTATACGTTCCAGAGACCTTTCTTTTGTTGGCGTGCTTTTCGTTCGGCTATACATCAGTGTATGAACATTTGTTATAATGTATTTACACGATTATTTCCTTTATTGACAATGATAGATAGATAATCCTTTTTCACTTTTATTTTTTTAGATATTTAAAAACGTGATAGTGAATTTTGTCGAATTTATTCACACAAACGTTATATAATAGTAGTAAAATAAAGGAAAGATAGAAGCTGCAGGAGGTAACACCATGGATTCCATTCAATTTCAAGATAAAGTGTCGTTTATATGGGCGAATGCAGATTTGTTGCGCGGAGATTATAAGCAATCGGAATATGGAAAAGTGATTCTACCGTTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1512942-1512479 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB205935.1 Anoxybacillus flavithermus TNO-09.006 chrAF6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1512941 37 100.0 33 ..................................... AAAAAATCACGCCAATCGGTCATCGCGCGTGTT 1512871 37 94.6 30 ...................................CA AACAATCACCCCTTAAAAATGCGCATAGTC 1512804 37 100.0 33 ..................................... TGGTAAGTATGCTTTTACAAGGGTTGACGTTGC 1512734 37 100.0 35 ..................................... TTGTATTTTCTTTTGCTGCTTTATCCATTCTTTTG 1512662 37 100.0 36 ..................................... ATAAAAAAACCTCCATTTCGCTAATCCACTATCATG 1512589 37 100.0 37 ..................................... ACCAGCTACATGGGTGTTACTAGGAATTGTTGCATTA 1512515 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 99.2 34 GTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAAC # Left flank : ATAAAGGGTGTGGATATAGTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAACATCACATCACCTTTTATTAGCGATCATTGAGAAAAGTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAACACATTACTCATTACCTCCTGTATCCATTAGATTGTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAACGAGTAGCGGACAAAATGTTGAATAACAAGGCGGAGTGAGTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAACACTCAAGACATTGAGGACATGCAAGAATTTATTCAGTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAACTACAAGGTAGAACTCAACAAGGAAGTCACCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATGCCAGCCGATCATTTT # Right flank : TGCAGAAGGAAGTATTGCGTAATAACGTATGTGCTGAAACTGTCGTGCGCATGACGATGTTGATCGTGGAACAATTATCAAATAAGTACATGCAACTGTATAAACATAAACAATATGATCCCATTCGGCAAGGGGATTTGCTTGTACGGGAGTTAGAGGAATATGTGAATATTATAAAATATGGAATTTACAAGTAAAGGCGGGGCTTTTCCCGCCTCATTTATTTGTAAGAAAATTATTGAAATTTTCTGTTTTTATATGATATGATATTCTCAAGGAATTTGAAACTATGTTTCGTAATACGCAACAAAAAAGAAAGGGGAATAATGATGGGGGAATATGTACAAGTTGGACGTTTGCAAGTCGCTAAGTTGTTTTATGAATTTATCGTTGAAGAAGTATTGCCAAATAGCCAAGTAGATAAAGATAAATTTTGGAAAAACTTTGAGCAACTCATTAATGAGTTAACACCAAAAAATAAAGCGTTGCTTGCCAAACGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 5 1513713-1513098 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB205935.1 Anoxybacillus flavithermus TNO-09.006 chrAF6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1513712 37 100.0 34 ..................................... CGATGACATAAACTTCATCTACAATCGGAAAATC 1513641 37 100.0 37 ..................................... ATAACTTGGCGGCGCACAACAGCTATCGCGATGCAGG 1513567 37 100.0 36 ..................................... TTAATGAACGTTTAATTAATACGATTGGTTGTATAC 1513494 37 100.0 34 ..................................... AAACTATGAAAAGAGGATAAAGGGTGTGGATATA 1513423 37 100.0 35 ..................................... ATCACATCACCTTTTATTAGCGATCATTGAGAAAA 1513351 37 100.0 33 ..................................... ACATTACTCATTACCTCCTGTATCCATTAGATT 1513281 37 100.0 38 ..................................... GAGTAGCGGACAAAATGTTGAATAACAAGGCGGAGTGA 1513206 37 100.0 35 ..................................... ACTCAAGACATTGAGGACATGCAAGAATTTATTCA 1513134 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 100.0 35 GTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAAC # Left flank : TGACATATGATGTTGAGACATTGGAGTCAGATGGTCAAAAACGATTACGAAAAGTAGCAACTATTTGTCAAAATTTTGGACAACGTGTGCAAAAATCTGTTTTCGAGTGTAATGTCAGCCAAGCGCAGTTGGAAGAAATGGAACATCAATTGTTGAAAGTTATTGATCTAGAAAAAGATAGCTTACGAATATATACGTTATATGGTCAACGATCCAAAGCAGTTCGCTCCTATGGAAAGGACCATTACATTGATTATAATGATCCGATTATTTTGTAAGAGTAGAACATATACAATATGTGTAGCAGTTATGAATTTTGGTGCGCGAACATAAAGCAATAGTAAACAATCAGGAGGATCGCGATGAGTAAAAAAGGCTTAGTAAAGCGAAGATCCAAAAATTCATCAGAGACTATCTTTAGCCACAATGCACACCAGACAAAACAGTTCGCGTTTTTATACTTTTACACTTGCTTCACGCATAGGATTGAAGCGTAGGCA # Right flank : TACAAGGTAGAACTCAACAAGGAAGTCACCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATGCCAGCCGATCATTTTGTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAACAAAAAATCACGCCAATCGGTCATCGCGCGTGTTGTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAACAAACAATCACCCCTTAAAAATGCGCATAGTCGTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAACTGGTAAGTATGCTTTTACAAGGGTTGACGTTGCGTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAACTTGTATTTTCTTTTGCTGCTTTATCCATTCTTTTGGTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAACATAAAAAAACCTCCATTTCGCTAATCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 6 1933894-1933316 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB205935.1 Anoxybacillus flavithermus TNO-09.006 chrAF6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1933893 30 100.0 40 .............................. AACATATTGGTTTGGAAGAAAAGTAAACATTCGCCAAACA 1933823 30 100.0 41 .............................. TCAAGGAGCGTTTCAGCAGCAAAGGAAAGATGGGAACGTGA 1933752 30 100.0 38 .............................. ATACAACAATCGACCAAGACTTTGAATCATACGAAGAA 1933684 30 100.0 39 .............................. TATGATTCCTCATACTTGTTAATATGCTCCCTGTCTTCA 1933615 30 100.0 37 .............................. TATATTCGGACTTTAGGATATTAAATAGCTCGCTATT 1933548 30 100.0 39 .............................. CTTTTCAAATATTGTAGTATCTTCTTATAAGCTTCCGCA 1933479 30 100.0 34 .............................. CGTCAACAATTTTTTTCTCCGTGATCGCTACAAA 1933415 30 96.7 40 ...........G.................. ACAATACGAGCAGCACGATATTTACCAGATTTCACAAGAG 1933345 30 96.7 0 G............................. | ========== ====== ====== ====== ============================== ========================================= ================== 9 30 99.3 39 ATTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TATTGTTTGGCTTTTTTGAAACATATGTGAAATTATCAGACGAAGAAGAACGAAGACTGCGAAGCGAGGTGAATGAAATGGAGACGAAAGAAAAAGAACAAGTGATGGAGTTGATTATTTCGTATGAACAAAAGGCGTTGGAAAAGGGAAGAGAAGAAGGGATAGAACAAGGAATCAAACAAGGAATCAAACAAGGGATGAAGCACCTTGTACAAACGATGGCCAAAAAAGGGATGAGTGTAGAAGATATCGCAAACATCACAGACCTTGCGGAAGATGAAGTGCGTGAGTTGTTAGAAAAGGAATAAGTAATTTGCGCATAATTTCACAACCGTCGTCGACCTCCAATCTTGCAAAAACCCCAGGGGATCGACGACAATTTGTTTTTTGCAACTTTTTTAGACGTATCAACGCATCAAGACGATTGACAGAATTTTCGAATGTATGTATAATGACATTGTATAGCTTTTCCAAGTATTGATTTATCAGCACTTTTTGGG # Right flank : ACCTTTGTAAAAATTCTTCAATTACTTGAGCTTTTTCGTTTGGTTTGTATCGTACCTACAAGAACCAGTATGTTAGGGTCTGGATTTTTTTGTATATACCATTTTACTTTTTCTTTAACATTTGTTATAATATAAGGTAGAGAACATCTTTCTTTCCGATTATGGTAAAGTGAGATGTTTTTTTCGTGGAAATATTGATTTCACAAAGAAATGGAGGGATTTCTGATGAAGAAATACGCCATTGTGTATTGTGAACATCAATTTGGTTCCATGGATGGAAAAACAGCGAATGGGCTTGTGCGCGATTCAGGGCTGTATGAGATCGTTGCAGTCATTGATTCGACAAAAGCTGGTCAAGATGCCGGAGAGGTGCTTGATCAAAAGAAAAATGGCATTCCGATTTGTAAAAACCTTCAAGATGCAATAGCCTCCGCAAAAGAAAAACCGAACTACTTCATCTTAGGAATTGCTCCAGCGAACGCTTTTCTCAAAAAAGAAGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 1966646-1965673 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB205935.1 Anoxybacillus flavithermus TNO-09.006 chrAF6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1966645 30 100.0 36 .............................. GGGGATTGACGAGTCGTACATCCGTAGACGAATCCG 1966579 30 100.0 38 .............................. TTTCATATATTTTTGTCTCTCCTTAACTAATATCTTCA 1966511 30 100.0 38 .............................. GGCAAAAAAATCGGTGGGTTTTTCTCGTCGCTTGGCAA 1966443 30 100.0 36 .............................. ATGACGCTATTAATTTATTGATCTTAATTATTACTT 1966377 30 100.0 36 .............................. TGTTCTTCTTGAAGCGTTCGATTATGATTTTGACTT 1966311 30 100.0 35 .............................. TACTCCTGATTTCAAGTGGGATTTCAAGCGTTTTG 1966246 30 100.0 43 .............................. TCTGATGAAGTTGGAGGAAATGCCGGGAATTCTGATTCACCAG 1966173 30 100.0 35 .............................. TATTTCTTCATAAAAAAACCTCCTCGCTAATTCAC 1966108 30 100.0 39 .............................. TTCAAGAACCAATCACCCCTTCACACATATGACATATCC 1966039 30 100.0 39 .............................. TACCTTTTTGCTGACGAAAGACAGCAGGAACTCACACAG 1965970 30 100.0 36 .............................. GTGATTGAACCGTCTTGGATTTTTGCACTTGTAATG 1965904 30 100.0 37 .............................. AGCGATAAAGTGTTTCCATATGATGACCTGCCATCGG 1965837 30 100.0 39 .............................. TCGGCATAGAACGTGCTTTCTTCCCCTTGAGGCTCTGGC 1965768 30 100.0 36 .............................. TTGTTCGGTGTCATAGAGTATAGTTTTCCATCATAT 1965702 30 83.3 0 G........................TCTC. | ========== ====== ====== ====== ============================== =========================================== ================== 15 30 98.9 37 ATTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TTTTACGCATGCTTGTCCAAATGGAATTAGACGAAGCGAAACAACGGTTATTGTTTGGCTTTTTTGAAACATATGTGAAATTATCAGACGAAGAAGAACGAAGACTGCGAAGCGAGGTGAATGAAATGGAGACGAAAGAAAAAGAACAAGTGTTAGAACTCATGATTTCGTATGAACGGCAAGGAATGAGACAAGGCATGAAGCATCTTATCCAAACGATGGCAAAAAAAGGGATGAGCGTCAAAGATATTGCAAACGTCACAGACCTTACGGAAGAAGAAGTACGGGAGCTGTTAGAAAAGGAATAAGTAATTTGTGTATTATTTCACAGCTGTCGTCGACCTCCAATCTTGCAAAAACTCCGGGGGATCGACGACAATTTGTTTTTTGCAACTTTTTTAGACGTATCAACGCATCAAGACGATTGACGGAATTTTCGGATGTATGTATAATGATATTGTATATATTTTCCAAGTATTGATTTATCAGCACTTTTTGGG # Right flank : CTCCCTTCAAACGGTGCCAGGCACTGTTCGTAAAGATTCTGCCCGTAGTTGCAATCTTTCTTTTTCTCCTGTAAATACACGAAAGTAGGTGGCATATAAAAATGGAAATGAGTAAGTTTATACTTCATGGCGATATATTGATTATGAAAGTAAAGATTGATGGTGTTGATTATACATTTAGCATTAGGTGGAAAGCACCGAAGAAACCTTATGATGAAACTTGGGAACTTGTATCATATGCGAAAAATTCGACTGGTGAAAAAGATTTAAGTGAAGAACAAATTAGGACGTTTATGGATACAGTTAATCCTAAAATGAATTGGAATATAGCAGATTTTCAAAAGTAAACTTCTTGAACTAACGGGTGTTTAGTTTAGTAAAAGATAAAAAGAATATACATATTATACATGACTAATATGTACGTTCCTTTATTTTTTAAGGCTTTTTATAATTTAAGTCTTGATAAGCAATGGGTTCTTTTTTATTTGCTAAATTATCAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //