Array 1 13298-13569 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIO01000015.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_63 contig0014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13298 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 13359 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 13420 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 13481 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 13542 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : | # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-748 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIO01000006.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_63 contig0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 111 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 172 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 233 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 294 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 355 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 416 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 477 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 538 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 599 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 660 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 721 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCTACCAGGCCCGTTTGTCTCAACCATGACCAGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17372-19597 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIO01000006.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_63 contig0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17372 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 17433 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 17494 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 17555 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 17616 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 17677 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 17738 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 17799 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 17860 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 17921 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 17982 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 18043 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 18104 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 18165 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 18226 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 18287 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 18348 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 18409 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 18470 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 18531 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 18592 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 18653 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 18714 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 18775 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 18836 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 18897 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 18958 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 19019 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 19080 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 19141 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 19202 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 19263 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 19324 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 19385 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 19446 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 19507 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 19568 29 96.6 0 ............T................ | A [19595] ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //