Array 1 117818-118244 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXAZ01000006.1 Paenibacillus aquistagni strain 11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 117818 32 100.0 34 ................................ CAAGCTACTAGGTTCGTGTTTATTTCTTTCATAC 117884 32 100.0 32 ................................ TCTACTGGTCGGCGCTCCGTAATCGCACGCTT 117948 32 100.0 34 ................................ AATACAATGAATCCATTGAGGTCAAAATCTACAG 118014 32 100.0 37 ................................ CATCTAGTTGATTGTTAAACGCGCCATAATTCAGCCC 118083 30 93.8 34 ............--.................. ATTTCTCTTGTGCTGATTGTCTCATAGAGTGGCC 118147 32 100.0 35 ................................ ATCATAAACCAAGACATCAAAGCTGGAAGCATAAC 118214 31 81.2 0 ...................T.-.C.....TTC | ========== ====== ====== ====== ================================ ===================================== ================== 7 32 96.4 34 GTCGCACCTCACGTAGGTGCGTGGATTGAAAT # Left flank : AGCCAATCGCCCACAACAAGATATAAAAATTGGTAAAACCATCATAATAGAGAAATGTTGCAAATGTCAATTTTATTTTTTGTAAGTCTGAGGGGAATGTGGTCGGCTTAGTTCATGGTTGATGCTTCTAACGATCGTGTTCTTTATCCCATCAAGTCCTTGATTAAGGTTTCAAGCTTGAATTTTAGTGAGCGAAGCAGTCCTTTTAGACTTGTGCCAGCACCCAATGTGATAGAATCATAGATATGACAAATTAGGTGTAATATACTAATAATGATGGTGTAAAAGTCTTAGCCTTCCTAGCTGAGGAGGGTGTGAGACTGAATTAGATTGGTGCGAACCCCAAGTGCACATGAAATCCCTGGGGGATTCGCACTTCGCTCTACGCAAGGGCTGCGGGCATTTTTGAGCACACATGACATCGTCAATTTGCATGAAAAAGTGTGATTCGCACTATTGGGGCTCTGAGCCCTTGTGCAGCGCGGCCTCCCAGCGCCGCT # Right flank : CGGTAACACAGACAAATTAGATGTAAATTATGATGAATTGAGGTGTTAAGGTGATAGATCAAGATGGCAAGAGGCAAGAGTTAAAACAATTGCATGACATCGTAGATAAGGTGTCTCAGCACCGAAGCACGTTACAAGAACGCTATTTCATAAAGGTGGTAACACCTATGTTTGGGGGAAGCAGTGAGCCTGGTGATGTCGATCCACGTTTCCCGATTCGAAGTGCTTCAATTCGTGGACATTTACGTTTTTGGTGGCGAGCGACAAGAGGAGCCCGATACGAGACGGCTGAAGAGCTAAGGAAAGTTGAATCAAATATATTTGGCGACACACAACATCCTAGTAAAGTGAAAATATGGGTTGATCAACCCATACATAAGCCGCAAAAAATAGAATTCAAGAAACGAGGAGAAGCAGGATATAACGAAGAGCTATCCAATCTCCGCTATGTTTTATTTCCCTTTGAAAACAAGCTGTCTTCATTGAAAAAGTGCACCAAC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 126172-126550 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXAZ01000006.1 Paenibacillus aquistagni strain 11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 126172 32 100.0 36 ................................ AATAAAGGTAAGCTCAATACCACGCTGACTCATCGT 126240 32 100.0 37 ................................ AAGATAGCACCCCTCGAAGATGAGTTGCATGGATTCG 126309 32 100.0 38 ................................ CCGTAATCATAATGCTCGATCCGATCAACCATTATGCG 126379 32 100.0 34 ................................ TCAATCGTTGCGGCGATCTCAAGGTGAAACGGCG 126445 32 96.9 36 ...........C.................... ATCTATTACACAGAATCCTTTGTAATTTTGGTAGAT GTGGC [126465] 126518 32 87.5 0 ................A..T.CA......... | A [126528] ========== ====== ====== ====== ================================ ====================================== ================== 6 32 97.4 36 GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Left flank : AGAAATTAAATCATGCAGAAGAGCAGTATAAGGACAATGTGATGGAGATGGAAGGAAGCTTTAGCGATATTACGTTAGATCAATATAAAGTGGGTTGCTGGGATAAAACGACTAATGCTAACGAAGAAGAGAGTAAGGTCAGCGATAATAAAGTAGTAGTGGGGGAAAGAACCATACTCTCTTTGATCTTTCAGTTGAATCAACTACTGATGTTGATTAATAATCCGTTGCTATTCCCACATCAAGCATATGTTAAAATGTTTAATAGGTGTCTAAATGAAGCAGAGGTAGAATCTATTCCACAATCTACTATAATATGAAAGATGAGGCGTGGTGCGAACCCCAAGTGCACATGAAATCCCTGGGGGATTCGCACTTCGCTCTACACAAGGGCTGCGGGCATTTTTGAGCACAAATGACATTGTCAATTTGCATGAAAAAGTGTGATTCGCACTATTGGGGCTGTGAGCCCTTGTGCAGCGCGGCCTCCCAGCGCCGCT # Right flank : TGATAAGACCTCGTCTAATTGTGAGACAAACCAGGTATAATAAGAACTATAGTGGCAGGCTGAATAAAGAAGGTGAACAGTATGAGGCTGGAGCAGATTGATCAATTAAAGACAGAATTGGATTCATATCGACCGCTTCCGCCCTCCGCGGTCCGAAATCTTGAGCAATTTTACCGAGTAGAGTGGACCTACAACTCAAATGCCATAGAGGGAAATACCTTAACTCTACTAGAGACTAAGATTGTTCTTGAGCATGGATTAACGATAGGTGGGAAGAAGCTGCGGGAACATTTTGAGATTATTAATCATGCTGAAGCAATCGATTATCTACAGGATCTCGTTCAGCAAGGTCAAGAACTGACACCGTATATCATAAAATCCTTACACCAATTGGTTCTTAAAAATATTGCGGATGATGCAGGAAGCTATCGGATGGTCAATGTAAGAATTTCAGGGTCACAGCATGTACCTCCGCACTATACTTTAGTACCTGAACAGAT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 198965-199739 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXAZ01000006.1 Paenibacillus aquistagni strain 11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 198965 32 100.0 37 ................................ GACCAACGTTGGCCGCGCCATCGGCACCATGATCTTC 199034 32 100.0 37 ................................ AACTTGATTAAAATCATGTATACCGATATTCCCCAAA 199103 32 100.0 35 ................................ CGTCCCTACTTTGGCAGTGTGGATGAATACCATTT 199170 32 100.0 34 ................................ AGTTGAACATATGCTTACTCGTATCAAAGAGAGC 199236 32 100.0 38 ................................ AGGATCTCGCTAGTACGATGGGGAATATGGCAGACCGT 199306 32 100.0 34 ................................ ACTGAGCACGGTAGGACCGTTGTAGTCGATGTCA 199372 32 100.0 35 ................................ GAAAGAACGACCGCAACTTTGCTGTTGGTGACATA 199439 32 100.0 34 ................................ TCCGGATTAACTGGCGGAGGATTGCCGTCCTCTA 199505 32 100.0 37 ................................ TTTATCAAATAGCTGCTATCGTCTACCTTAATGAATA 199574 32 100.0 36 ................................ TACCTATTAGGCTTTGTTATCCGCGCCGTTTGTCTT 199642 32 100.0 34 ................................ ATACGCAAATTAATGTCAAGATCCAGATACTTAA 199708 32 87.5 0 .......T....AC.....T............ | ========== ====== ====== ====== ================================ ====================================== ================== 12 32 99.0 36 GTCGCACCTTACGTAGGTGCGTGGATTGAAAT # Left flank : GCCAGGACTGACGAGAGAGATTGCCGAGAACTCAATCTATGCGTACATCGAGCATACGCTGAACCTTCAGATCAGCTACGCCCGCCGTGTCATCGAGGTGCAGCCGTGCAGCGAGGATGATCGCCAGTATCTGGATTTGAACGGGACGGAATATGTGGTCGTTGTCAAAAACTTTACGTATTTGTACGATGGAACGCAGTTCGAATATACGGAATCGAGAATGCGGCTCGACAAATTCTATTTTTCCGATATCGCGCGGAGATCTTAATGTGAACTGCAAGTTGAGCAGCTTTGCTTATCAAGAAGGACTTGTTATCGCTGGTGCGAATGTATAGCTCACAGGATTTCCCCGGGACATTCGCACCAATTATTTTACAAATAATTCTAGAGTGATTACAGATTTGTAATATTTGTCGTTTGAAAATATCTGTATAAAGGCATGTATGGATTTTTATGTTATAATTAAAGGTGATTTTTCTACTTTTTAACCAAAATTCGCA # Right flank : TCGATCATATCTAGTTGTGTCTTTACTTAGCAGCTCGTCGCACCTTACACAGGTGCATAAGCCAGCTCACAGCCTTCAACTGCAACTCAACACATAAAAAGGTGCACTCTCCGCGCAAAGGAAGAGTGCACCTTTTTACTATCACTTCTTATTCTCTATCGCTTACACGTTGCGCTACAGCGATTTTACTTCAAACAACTCCTGCGATACGCCTTGCATAAAGGCGGTCGGTTCACCCGCATGGAAGATGGTCAGCTCGTGCATGGCACGTGTGCAAGCAGTGTAGAATAGATTGCGCTCGCCTTCGTCGTTGAATTGCTCAGCGGAGGCGTTGTAGATGACTACCGCATCGAACTCAATGCCCTTCGCCAAGTAGGTTGGAATAATGACAAGCCCTTTGCTGTAGGAACTGCTTTCCTTCTCGACCAAGCGGAAGGGCAGACGATCACCAATTCGCTCCGCTGCTGCGCGCGCCTCCTGAACCGTTTTACAGATGATCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 271500-272065 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXAZ01000001.1 Paenibacillus aquistagni strain 11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 271500 32 100.0 36 ................................ TCCAGACAGAGATGGAAGATGAAGAGATCCCTGTTC 271568 32 100.0 34 ................................ AAAATAAATCAGCCAATCGACTAAATAAGCTGCA 271634 32 100.0 34 ................................ ATCGAGAATCAAAATCTTAGGAAAATCACGATTG 271700 32 100.0 35 ................................ ATCTGGAAGCACTACAAAGAAGTATCCTTGATCAT 271767 32 100.0 36 ................................ TGGAGCATCCTTATCTGGACAAAGAGCAATTACTTG 271835 32 100.0 33 ................................ AATTAACTTAATATACAGTGGATAGCCCACATA 271900 32 100.0 36 ................................ ACTTTGATGTTTGGGCAAAAGGAAGCACCTCACCTA 271968 32 100.0 35 ................................ TTGGAGAGCCAACCGTCTTTTGATCGCCTCGGGGT 272035 31 75.0 0 ..........G....A.G.T..-..G.A...A | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 97.2 35 GTCGCACCTCACGTAGGTGCGTGGATTGAAAT # Left flank : CTGCCTTATGTCAGCAAGAAGGAGCTTCGCCAAGAAGAAGATATCATTATCGTGTCGCCCTCCAAGTCTAAGGTGAGACGTGCGATGCGCATTTTGAACAAGTCCGGCTTTCGCACAAGCGGGAGCATTGTCTGGAAGGAATCGAATTCTTTGCCTTGCAAGGAGAGACAGGCGTCATAATTGGAGTGTAGTGAAGCGGGTGGTTGTGCACTCGCTTTTTTGTTGCCTTGTAATTTGTAAGAGTAATTATTTAACCGTATGTTCACGATGTTTGCTTTGCACATGTAAAAGTACTTGAAGGGAAATTGGATATGGCATCGAATTTATGTAAAGTGCGAATGTATAGCGCACATGATTTCCCTGGGGGATTCGCACCTGTTGCTGCATAAGGGCAGACGTCTTTCTTGCGCATTTTTGACATGGTTTTATTTTGTCTTTTTATACGATTCGCACCTTTAGGCTTCTGAGCCCTTGCGGTGACTGGGTTCATCTTGGCCGCT # Right flank : ACAAGGACACATGCAACCATAGTTCTACAAATAACAAAATGATATATAAAGCAGATTTATATTGACAAATGTTAACTTTGTTGGGGATAATAATAAGGGCCTAGGTGAAAGGAAGAAATATAGTCCTACATAACCATCCCTCTCATATGAGTTTTAGGTATAAATAAGCATGCTTAAACTATGAACGAATGATCATATAATATTTTATTAAAGCGTGTTCCATTCATTAAAAATATAATATAGCAGGTGATCTCATGAGTTTTTTGAATAAGTTTAAAAAAGGTGTGGCTGAAGCAGGGACGTTAGCGAAGGTAACCGTTGAAGTGAACCGTCTCAAGCTTCAAATCTCGAATAAGAAAAAAGAAATACAAGAGCAATATTCGCGCATAGGAGAGACTGTATTTCAGATTCGACAGCAGGGAGAGTCGGAGGCAAGTCTCGCAGCTATTGATGAACAATGTGCGAAGATTCTAGAGATTCAAGGTGAGATGCAGCAGCTG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 364947-362741 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXAZ01000002.1 Paenibacillus aquistagni strain 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 364946 29 100.0 38 ............................. TAATGTTCTTGAAGCGCATGAACTTCTTAGGCGCGTAT 364879 29 100.0 35 ............................. AGTATCAAACCGCTGATGATGGTCGTCGATGCCCA 364815 29 100.0 38 ............................. TCATAAGTTGTTGCTCAGGCGGCAGTGCGGCGAATTGC 364748 29 100.0 36 ............................. TTTCAAGCTTAGCCATGGTCTTTGCGGACAGCTTAC 364683 29 100.0 38 ............................. TAGACACGCTTGTCCTTACCATCCCGAAATCGACGATA 364616 29 100.0 36 ............................. AAAGCAGAACCCCAAGCGGAACGAAACATCATGAAA 364551 29 100.0 37 ............................. TCGATACCCCAATTCGCAAACTTAATAAGTATGTTCA 364485 29 100.0 37 ............................. AGTCTTTGTGTCACCCGTTGTTGTGTCAGTCCATCCC 364419 29 100.0 37 ............................. TTTTTTGATCTTTTACAACAACTTGATTGCTTACTTC 364353 29 100.0 36 ............................. CCTATGCCCGTCTTCTGTTCCAGCGCTCGTGCGCCG 364288 29 100.0 40 ............................. TTCGAATGCAACCGATACCTCTCGTAAATAATGTACCCAG 364219 29 100.0 36 ............................. TGCTCAACAGGCTTTGTCCGACGCCTGTTTTAATTA 364154 29 100.0 37 ............................. ATGTTCCGCCAGTCGTTTGCTCTACGTCACCAAACCC 364088 29 96.6 38 ....................A........ GCAAGAACCCATGGATTACTAAACAAAGCTGAAGCAGC 364021 29 100.0 36 ............................. CCCATCACGTCTTCAATGACGAGGTAATCTGGTGTA 363956 29 100.0 38 ............................. GTACAGCAGCATTCTGATAAGGAACAATGCTTTCAATC 363889 29 100.0 37 ............................. CCTTCGCATGGGTATTTAGCCAAAATCAAACACTTTG 363823 29 100.0 38 ............................. CCATTACAAGATTATGAGGCCATTCCTCGAACTGCGGC 363756 29 100.0 36 ............................. TAAATTCAATGATCTCTGCGGCTGTCTTATCATCCG 363691 29 100.0 37 ............................. TATTACAACTCGATAGGACGCTCAACCAATTCAGAGG 363625 29 100.0 35 ............................. TGAAAATAATCGCTGTCTGCGTCGGATCGTACGCA 363561 29 100.0 36 ............................. ATACTTCGTCCGAAACTGCTCTTTATCTTTCTGTTC 363496 29 100.0 39 ............................. CCGTAAACTCGTCCCACTTGTCGTATACGATCGATTCTA 363428 29 100.0 38 ............................. AGACAGCCATGTTACATTAGCTCTGCTGCTATACTCTG 363361 29 100.0 36 ............................. ACTACAAAGATGCGGGGGAGAATATCCCCCGAAGTC 363296 29 100.0 36 ............................. CCGTCTGAATTGTCGTATGTTAAGTCCATAGGATCG 363231 29 100.0 37 ............................. TGCGAATCCACGACCGCCGTTGTTGCTCTCGATTTTC 363165 29 100.0 39 ............................. TAGTCATGTAACTTTATGGTACAATTTTCGTATATAATC 363097 29 100.0 37 ............................. GTGTGATTGACGCGCAATATGAATGGTTTTGGATTGT 363031 29 100.0 36 ............................. GTCGATACTGTTCGGAGTGACGTGTGTAGACGACCG 362966 29 100.0 37 ............................. ATGCGTTATACGTTCGGATGTGAAGCGGTGAAAATAA 362900 29 100.0 37 ............................. ACAGCAAGCAGCCAAGAGAGCCATGATTGAATGGTTG 362834 29 100.0 37 ............................. CAGGTAGTTCCCTTGAGCGTAATGCTCGGCCTCGCCA 362768 28 82.8 0 C......A.......-.........G..T | ========== ====== ====== ====== ============================= ======================================== ================== 34 29 99.4 37 GTTTTATTTGAACGTAGTGGGTTATAAAG # Left flank : TCAAGCATTATATTGGCGACGAAACGTACAAGCCTTTTAAAGCGTGGTGGTAAGGTGTTTGTTATTATTACGTACGATGTTGGTGAGAAGCGAGTAGGCAAGGTATGCAAGAAATTACGTGAGTATTTGGATTGGACGCAGAACTCTGTGTTTGAAGGAGAAATTACGAAAGGCAAACTAAAAAAATGTCTTTCAGAGGTTAAAAAGATAACGACAGAAGAAGATTCCATCTATTTGTATACGATAGAGAACCCTAACCACATGACCAAGCAGGTCATTGGCAAGGATCGTTCGTTTGATCAGTTATTTTTCTAATGTTGCATCGAGCGATTTTCTCAAAAAAAGCCCGTAATCCCTTGTGACAGTAAGGATGCTAGGTATATTAGAATCATTCTACTTTGCAGCATTGGAGGTTCGATGCAAAATAGTGTGATCGGCATGGACCTGTACCGGCCGCGAGCCTTGTCGCAGCAAGGGATTTCTGGTACGTTAGAAACAGG # Right flank : TAATTCCAAGCAAAGATCTACTGTGCATGACTAACTGATTAATTTTACAGAAGTAAAGCCTGTACCTCGAAGTTATAACATGAGTGACAGGCTTTATTGTGTATACAAGAACGTAATTATCGTTTAAAGTCCATCTTTCCTGTTACAGTAATCGTTTTGGTCTTGCTGTCCCATTCAATCGTTTGACCCAGCAATAAGATTGCTTCACGTATAGGGATAAGGATATCGCCTTGAGTAGAAGTGAATGTAGCATTTTTCATTTCATGATCATCTAAGTTAAGAAAATAGATAGAAATAGCTTTTTTATCATTGGATCACCTTTATTTATTTTACTTCAACTAAACTACGCAGTCTTACGAGAAGATATTTGAACTCATTAATGAAATATGAAAAAAACTCCTTATACTAGATAATTCTAGTATAAAGAGTTGGATTCCTTTATATCTCATACCACTTAATCTCGTTAGCCTCTAGCGTGAGCGGAAAACGGGTGCCATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTGAACGTAGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 376440-377915 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXAZ01000002.1 Paenibacillus aquistagni strain 11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 376440 29 100.0 35 ............................. TATCGAAATCATCGAACGAGGGGCCTTCGATAAGA 376504 29 100.0 37 ............................. CGATCCGCTTTATTGAAAAATATTGCAAACCTTCGAA 376570 29 100.0 36 ............................. TGAATGGCAAGACTCGCTATCTACTCGTATACATCC 376635 29 100.0 36 ............................. CTCGTATTACTCACCGCGATAAGTTCTTGTACTAGG 376700 29 100.0 36 ............................. TCACGACAATACTCTTTGACTCGCGCGAAGAGTGAA 376765 29 100.0 38 ............................. GATGGGAAGGCTGCGTTCGCTGCTGATCATCCTAACTA 376832 29 100.0 38 ............................. GTTAGATATTTACCTTCTGGTAGATCAAAAACGACAAA 376899 29 100.0 41 ............................. AAGTCGAAAAGCAAGAAGGAGAAGACGCCGAAAGGTAAATC 376969 29 96.6 37 .....................T....... GAGTGCCATTTACGAATAACTTTGCCGTTGGTAATTC 377035 29 100.0 35 ............................. TCAATGCCGAACAAGATAACTCGAATCTTGAATAT 377099 29 100.0 37 ............................. CCCCTCCGTAAGATCTCAACAGGTAGTCAATCTTCTT 377165 29 100.0 37 ............................. CGATCCACGACCGTGGAATATGATCCTGAGGAAGCAA 377231 29 100.0 37 ............................. CGCTCAACTACGAATCACAAATACGCGAAGTTCATAG 377297 29 100.0 38 ............................. TTTTTTAAAGCGGTTTAAGCGTTTAGATTATTGACTTT 377364 29 100.0 38 ............................. CAACCCTTTCCGATCAACACTCCGAATAACGCATCTGA 377431 29 100.0 35 ............................. GTGGTATTTGACAATGATAGAATTAATTGTACAGA 377495 29 100.0 35 ............................. TTTAATCACGCCTTGCTCGAAGCTCCAATTACGCA 377559 29 100.0 37 ............................. TCGGACGTCTTTGACTACTCCGACCTAAAGCATGATA 377625 29 100.0 36 ............................. TCTAGACTTACTGCTTGAGCCAATTACAGTGTTCAA 377690 29 100.0 37 ............................. AAGGTATACATGGACAAGCTTGGATTACTTGAAGACG 377756 29 100.0 37 ............................. TAGACGCACAACCTAAAGGGCAATAAGGGATACGGTA 377822 29 100.0 36 ............................. CTGAAAATGGCGCGTTGGGAGGGGCCGCGCAAGCGG 377887 29 96.6 0 .....................T....... | ========== ====== ====== ====== ============================= ========================================= ================== 23 29 99.7 37 CTTTATAACCCACTACGTTCAAATAAAAC # Left flank : TTTAATATTTACTTTATGAATAATAATTCATATAATAATCTTGCAGGGTGTCATCTGCCCAAAATTTTACATTTATACTTTCATAGGAGGTACATAATTATGATGGAAATAAAAGATGCGCTATTACTAATGATCAGTTTTTCTTCAATGATTATTGCATTACTCATTTTAATCGTTAACATGAGTGGACAAAAACAAAAAAAGTAGACTGACTTTTTAATAAAAGCAGCCTACTTAATCATTCTTAATTTATTTAGTAGAAGGTCATGCTGGACCCATGACCTTCTGTTTCATTTTACAAAAGTACTTCTTCAATTTCAATTGTATATTCGTTTAAGATTCCTTCTGCATTCACACTAGTATCAAATAATCTCTAGTACTCTCTAACAATACTTTCAAGCAGCTTTTTAGACAAATTCACTAATCTAATAGCTTTATAGAAAGACCAGCTTCGTTCAAAACCAACTTGTGAAGGCTCTGGTTAGCTTTTGTAGTTGCAT # Right flank : CCCTGTTTCTAACGTATCAGAAATCCCTTGCTGCGACAAGGCTCGCGGCAGGTGCAGGCCCATTCCAATCACACTATTTTGCATCGAACCTCAATGCTGAAAAATGGAATCATTCCAATATACCCAAACCCCTTACTGCCACAAGGGAACTCAAGCTTTTTGACGAAATAGCGCTCGATGCAAAAAGTGTCCGCTTGCTTACTCTATGAATACCTCTATTGTTCAACATTATACCCTTCCACATCCTGCCTGCATATGATCCCCTGTTCCCTTTTCCTTTCTTCCAATCTTTTGGTAGTATAAGAACATGTGGTAAATCATGTAAGGGATAGATCCTCGCTTAATGATATTCGGGGTGGGATTCAGGGTAGGAGGAAATGATGGATTACGAGCCAACAACATATCCAAAGCGCGCTCTTTCGAAAAAGAAAGGGCTGCAGAAGAAAACCAAGATAATGCTATCGATTCTGCTCGCCTTCCTGCTGGCGGGAAGCTTGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATAACCCACTACGTTCAAATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //