Array 1 176573-174964 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFF01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1760 1760_3_length_627495_cov_81.6303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 176572 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 176511 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 176450 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 176389 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 176316 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 176255 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 176194 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 176133 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 176072 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 176011 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 175950 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 175889 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 175828 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 175767 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 175706 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 175645 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 175584 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 175523 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 175420 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 175359 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 175298 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 175237 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 175176 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 175115 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 175054 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 174993 29 96.6 0 A............................ | A [174966] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 193957-192831 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFF01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1760 1760_3_length_627495_cov_81.6303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193956 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 193895 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 193834 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 193773 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 193712 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 193651 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 193590 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 193529 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 193468 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 193407 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 193346 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 193285 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 193224 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 193163 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 193102 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 193041 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 192980 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 192919 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 192858 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //