Array 1 97919-99899 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCGM01000096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain TT9097 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97919 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97980 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98041 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98102 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98163 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98224 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98285 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98346 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98407 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98468 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98529 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98590 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98651 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98712 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98773 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98834 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98895 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98956 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99017 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99078 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99139 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99200 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99261 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99322 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99384 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99445 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99506 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99567 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99628 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99689 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99750 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99811 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99872 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116032-117508 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCGM01000096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain TT9097 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116032 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116093 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116154 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116215 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116277 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116338 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116399 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116460 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116521 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116582 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116643 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116704 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116765 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116826 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116887 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116948 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 117010 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117113 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117174 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117235 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117296 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117357 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117418 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117479 29 96.6 0 A............................ | A [117505] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //