Array 1 6713-5555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSB010000001.1 Listeria seeligeri strain FSL L7-1356 NODE_1_length_462882_cov_102.513122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6712 36 100.0 30 .................................... TTGAAAAGGTGGAGAAATAATTATGGTACA 6646 36 100.0 30 .................................... AATACGTAACAAACATGGTATTGTTACTCA 6580 36 100.0 30 .................................... ATATTTTCGCATGAAAAGTTAAACTTGCAT 6514 36 100.0 30 .................................... CTCACGTTGTAACTCCTTTAATTCCCACAA 6448 36 100.0 30 .................................... TCCGAAATTAATTGGTTATGAAACAGTGAT 6382 36 100.0 30 .................................... AAATCAGGCGATGATTAAATCTCAGTATCC 6316 36 100.0 30 .................................... TTGCACACATCATGATGTGCGGAAGTATAA 6250 36 100.0 30 .................................... TGACGATACTTTCAACATCTGTTTGCGCCT 6184 36 100.0 30 .................................... ACTTAGTAATTTTTGAACATCGGAATTATT 6118 36 100.0 30 .................................... AAGTTTTCTGGTCTAATTTCCCGTACTTCT 6052 36 100.0 30 .................................... AGCGGGTGCTGCGTTGCCACTAGTGAGCGA 5986 36 100.0 30 .................................... CCCAGCTACTGGGAACTCCTGTAAGACCTA 5920 36 100.0 30 .................................... TTGTTTTTGACATAAAAAATAAGCCTTATT 5854 36 100.0 30 .................................... TCTCCCAGATAAAATCGCCACGTTCTATGT 5788 36 100.0 30 .................................... ATATATTTCGAGCGCTTTTTTAACATCACG 5722 36 100.0 30 .................................... CTATTCAAGAAGAATTGTTGCCGGCAACAT 5656 36 100.0 30 .................................... AGTTGGAAGAAAAGCGAATTATGGGCTATA 5590 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCAAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTGAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCGATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 147629-148172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSB010000003.1 Listeria seeligeri strain FSL L7-1356 NODE_3_length_337518_cov_84.375238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 147629 29 100.0 37 ............................. TTTGTTAAAATAAAAGAAGACTTGTACGAGTGCGATT 147695 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 147758 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 147822 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 147886 29 100.0 37 ............................. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 147952 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGTAATTT 148015 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 148079 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 148144 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAACTGGGTCTCTGCTTTTTGTACGTTAACTTCTGTCGACCGATAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTAGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGATCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 154394-155908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSB010000003.1 Listeria seeligeri strain FSL L7-1356 NODE_3_length_337518_cov_84.375238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 154394 29 100.0 37 ............................. TTCTTCTTCCTCTCCTTCCTTTAGATACTCTCCCTCT 154460 29 100.0 35 ............................. ATCGCTTTTAATCCCGGTTGAATAACATCCCAATC 154524 29 100.0 36 ............................. ATTAAAGTCCGGTCGACCTCTTTACTCTCAGCAATC 154589 29 100.0 35 ............................. ACTGCTAAGATGATGACTGCTTCTTTCACTTTTAA 154653 29 100.0 36 ............................. AGACATATTTATTAAGAATACAAAGAACGGAACACA 154718 29 100.0 35 ............................. CTTTTTGTTTTTAAGCGAGGTGTACCTCCCTTTGT 154782 29 100.0 34 ............................. ACAAGATCGTGACTGCTGAGCCTGTTTCTGCCAA 154845 29 100.0 35 ............................. CGACCCCAGCGGGATAGATATGAGTAGGGATATCG 154909 29 100.0 36 ............................. CCCTTTGTTTTCGCCATTCCGGCGATAGTAAACACC 154974 29 100.0 35 ............................. TTGTTTATGACCTCATCGTCATCCAATGGCTTATC 155038 29 100.0 36 ............................. TTCTCTTGCTGTAACTGATGAATCTCATCTGTAAGT 155103 29 100.0 37 ............................. TATTTATAACGCCAATTACCTGTTTCAGTCGCTACAG 155169 29 100.0 36 ............................. GTTTGAATGCTCTGATTAAATGCTGTTTGAGATTGC 155234 29 100.0 36 ............................. TCCATTCTGAAGTGAAAACAAATTATTTTGTCTTTT 155299 29 100.0 35 ............................. AAACGACGCGCTGTATTATTAGCTTCTTTGAAATT 155363 29 100.0 35 ............................. GTTAAAATATGCTCTGATTGTTTTATGACTGTTTT 155427 29 100.0 36 ............................. ATTATTATTTATTTTCGCTTGAAATAGCGTAGGGAA 155492 29 100.0 36 ............................. AAAACAAGCGTAGAAAATAAAGATGAATATTTTCTT 155557 29 96.6 34 ................T............ GAATACGGGCGAAGCATTACCGTCGTTCGTTTGT 155620 29 100.0 35 ............................. AATTTAATTTAATAGGAACATTCATTACAGACGCC 155684 29 100.0 36 ............................. ACTCACGTTTGATTTCTATCTTCACAAAAGCTTTGC 155749 29 100.0 36 ............................. TAGATACATCTACAACACGCAAAAGCGTCCCAACAG 155814 29 100.0 36 ............................. CCACGTGGGGAAAGTGTACCCTGCCCTGTTACTAAT 155879 29 86.2 0 ........C....C..A...........G | T [155905] ========== ====== ====== ====== ============================= ===================================== ================== 24 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGGTATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCTGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 164523-165904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSB010000003.1 Listeria seeligeri strain FSL L7-1356 NODE_3_length_337518_cov_84.375238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 164523 29 100.0 36 ............................. AACTGATAGAAGTCATCAGTTGTTTGCGGATATAAT 164588 29 100.0 37 ............................. ATGGAAATTATCCACAAAAAATGGGGAACTGGCTTTT 164654 29 100.0 35 ............................. ATTTCACTAAATTTCCCGGCGAAGTATACACCGTA 164718 29 100.0 36 ............................. TTCGTTAAGAGGATCTTGTGCCTTCGTCAGATTCCT 164783 29 100.0 35 ............................. ACAGGTATCGGCTCAACAGTTTTAGAGAGCATCAC 164847 29 100.0 35 ............................. CTATCAGTTTCTTCCTCCATTGTTGTTCCATCTTC 164911 29 100.0 34 ............................. ATTTCAAAGTTCATTTAATTTCCTCCTCTAAATC 164974 29 100.0 34 ............................. ATATGATTAGAGAAAGAAAAATAGAACCATTTTA 165037 29 100.0 34 ............................. AAATATTTAGTTTCTTGGCTGATCATGCTTTGAC 165100 29 100.0 36 ............................. TGAAAATTAAAATAAACGGAGATTACGTAATCAGAG 165165 29 100.0 35 ............................. AAGACCGGAAAAGTTTCTAGCAATGCGCCGGAAGT 165229 29 100.0 36 ............................. CTTTATCCGTTCCGGCTAAAGTAGGCGATATTTTGC 165294 29 100.0 35 ............................. GTTACTAATGACCATCCGGCCGAACCAGTTAATGC 165358 29 100.0 38 ............................. TTCGGTCTAGTTCTAGCTTTTCTACCCAGTTTGGATTT 165425 29 100.0 35 ............................. TATCAAACTCAGTTGCTGGCACTAAATTATAGACC 165489 29 100.0 34 ............................. ACATGTCGTTTTTAAAATTACGAAAAGCGGATTT 165552 29 100.0 36 ............................. GAAAATAAGAAATGAGGTCGAAACATGCCGAATACA 165617 29 100.0 36 ............................. AACCATCTGGTAGATCAGTGGGGAATGGAATTTTGT 165682 29 100.0 36 ............................. AAATATCATTTGACTGATGAAGAAATTCATGAAGTA 165747 29 96.6 34 .........................G... TGTGGTAGATAGCATCGCCAAGGGAGGTAAGTCG 165810 29 100.0 37 ............................. GTGGTCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 165876 29 75.9 0 .......C.G.....CA......A...CC | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 98.8 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGATCGACAGAAACGTAGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCGAAAAACCCCACCCTCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 65605-65971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSB010000006.1 Listeria seeligeri strain FSL L7-1356 NODE_6_length_203909_cov_94.848554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 65605 36 100.0 30 .................................... TTTGGCGTAGTGAGTTATATCGAGGCGCAG 65671 36 100.0 30 .................................... CAGAAAAATAATTGATAGCTGGATATGGCA 65737 36 100.0 30 .................................... GATAGCTTCCATGCAATCGGCGGGGACTGT 65803 36 100.0 30 .................................... AATTATTCCGCAATTTGTGGCTGATGCAAT 65869 36 100.0 30 .................................... AATATTGATATAGTCTCTGCTGATACAATG 65935 36 88.9 0 ...........................A..AA..G. | G [65968] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.1 30 GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Left flank : AGCAACAATGGTGTAAATAAAACATTAAAAAGCATTTGCAGTCGTCTTAACATCCAGCCAATAACCTGACACGTCTTACACCACACTCATGGTTCTGTTCTTTTGTATCATGGTTTGAAAATCAAATATATTTCAAGAAGGTTAGGACATTCAGACATAGTTACTACACGTCAAATCTATTCTCATGTTTTAGACGAATTAGAACAAATGCAAAATAGAAAAGTTGATCCCATTATGGAAAGATTATTTTAGGTGTTGTGCAACCATTTGTGCAATCTTTTTTATAAACATACCTTTTTTAACACTTTCTCAAATAGAAAAAAGAACTATAAACGGCTACACAAAGCGTTTTATAGTTCTTTTATCTTTTTCTTTATTCTTCTATTAACGTCCTTTGCGAACGTCATTTTCTTTTAATTTCCATTTCATCTTCATCTAAAGTTTCCTCTCTAATATCGACGAATTTTTAATAGCCACTAATATAGTTATCCACATCTGGT # Right flank : CTTTAAAAGAATTACTTCATCGTTAATAGCGTTCTTACTAGTTGACAGTATTCATTAGAAACTTGATTTGAAGAAACAGTACTTTTTTCACCTAAGTGGTGTATTTTTTTAGGTTGGAGTTTATCAATTTTTAAATGATGATTGGTTTGATATAGTGGTTTAAATGTCACTTCCATTCCATGAGAGCTTAAAATTTCTTTCAAAGATTTAGACACCGCATTCTTTAGTTTACGATCATAAGAAAGTACATCTCGAGCATCGTCAAATAATTCTAAAATAGAGTTCCCTAACTGTCCGTTAAGGTAATTAAAATGTGAAATTTTATTTCGGTTTTTTTTCAATGGCCAAACAAACATTTCCAAGTGATTTAAGGTTGAAAGTAATAGCTGAAGATTATTTTGTAGTTGTTCATTTTCTTTTACGACTACACATTCTGGTTCAGAGGTATCTTTAATATTATATAACTCATGACGTTTATAGTTTTTATTCCTAAACCCTAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 69311-69676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSB010000006.1 Listeria seeligeri strain FSL L7-1356 NODE_6_length_203909_cov_94.848554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 69311 36 100.0 30 .................................... TTAGAAGAGAGAAAAGAAGAATTGTTATAA C [69340] 69378 36 100.0 30 .................................... ACGCAAACCAATGAAGTGATAGCCAAAAGA 69444 36 100.0 30 .................................... TACTGTGTCCACCAATATCTGAAACGACCT 69510 36 100.0 30 .................................... ACAGATGGGCGAAACAGCGTGACTATTTAC 69576 36 100.0 30 .................................... CACTATCAACCCAAGTCGATGATTATGAGA 69642 35 83.3 0 ..................T........-.A.TG..T | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : CTGTTTTTTTAAGCTATCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTTAGGACTATTTTCAGGAAAATAAGATAAATTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGATATCTGAAATTTTTATTTCCCCACGTTCTTTTTCTTGTAATAATCCATGAAATAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACGCTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTTTTTTCTATTAACCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGTGTTTTTATACTTATCCACATTAGAC # Right flank : TTCCTACTTAATAATAGTAATTAAAACAACCAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGATAAAGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGATAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGCGTAGTCACCAACCATCTTCCCGTGTCGTCTCGCACTAATTCCAAATCCAGTAGCACTTGACTTTCATTCTTCTTTTGCTTGTCGACTTGAAAAGTAGACAAGACTCGCACAGTTACTTGGCACTTTTCACCTTCTAAAAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACTTTCACTACATTTTTAGAATCACTCGTTGTTTCCCCTTGTTGAAAGTAAGGAACCATTTCTGCCGTGATAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //