Array 1 12067-12424 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMI01000083.1 Eisenbergiella porci strain WCA-389-WT-23B seq83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 12067 31 100.0 33 ............................... GCCCGAGTCGCTGCCTGGCTAAATGATACCTTT 12131 31 100.0 33 ............................... GATAGCTTTCCGGAAATCTTACCTGATTAAACT 12195 31 96.8 35 ..............................C CCCTGTGTAAATTCCAAACTCATAGCCGGCACCGA 12261 31 100.0 35 ............................... TAAGGAAACGAAGGAAGAATTTATTGCGTCTTGCC 12327 31 100.0 36 ............................... CATTATACTTGCCAGATGCGGCAACGTCGTGGCCCT 12394 31 83.9 0 ....................CA...A...TA | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 96.8 35 GTCTCGGTCTTGCGACCGAGTGGATTGAAAT # Left flank : CGGCCAGGCTGAAAATGCTGATGGGAGACAGGCTGCAGGCAGTGGAAACTAATTATTGAGATATGGCGGGGAGAGCAGAGCTGCCGCAGAGGTGGTTTTACTGCGGGTATTTGTGGAATGGGGATGGCTGCGGAGATAAATATATTTGTAATTAGTGAAATTATAAACCGTTTAGAATGATATATTTTTATAATTCAGTGTATATAAATGGTGAAAAATTCTGCTAGTGTGTGGATAGCTGGGAATTTTTGCAGGTAAGATTGGGAGAAATGTGTAGTAAGGATCTGAGACTTAAGCGGCTAAGGTGCTTTATAGGGAAAATGAGAGTTAGTGCGAATATGAAGTGCACATGAAATCCCCAGGGGATTCGCACCTGGAAAAGACTATGTTTTGTTTGAATATAGATTTGAAATTGAATAAAAGTAAGCTGGGTTAGTTTTTTATGTGTGGAATGTATAGAGAAATGGTGGTAGAATGATTAGTAGTTGTTTAGTTTTGCT # Right flank : AAGTATTAATATAATGTTGGATTTCCCCTGTTTTACTCGTTCTAATAAAGATACGCACATAGCAGTCCTCACAATCTATCCCTGCTTATGTTATACTCCAACACACTTAACTGTTTATTCCTATAAAAAGATACAACATACACTAATAGTTTTACATTCATAAAACAACTAAATAATAAACAAATCAATTAACAGGAACCCCAAAAATGAAAGCACCAGAAATTAAAAAAATTGTAGAAAACAGACTCCAGGAACTTGGAGCAAGCAAAATTCTTCTCTCTCCATCAGATTATTGCTGGGAATTCCAAGGTGAATTTTACAAGGTGACGGCCTTATCTGATTTATGGATAATAGAGTGGACCAACAATCCTTTTTACGCACTTAATCAATGCTTTGAAGATGCGGATCCCATGCAATACGATTTATTAGAGCAACAAATAATTGAATATATTAATAAACTGCTGCAGCATTAATCAAAAAACCGGACAATTCAAGTTTAG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGGTCTTGCGACCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : NA // Array 1 7952-5676 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMI01000040.1 Eisenbergiella porci strain WCA-389-WT-23B seq40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7951 32 100.0 35 ................................ CTTGCAATCCTGGGAAAGGACTGGTTTTCGGACTC 7884 32 100.0 33 ................................ TGTTGTTAAGATTATTATATCACTTTTAAAAGT 7819 32 100.0 35 ................................ ATTTTATCTTTGCTGTTTTATAAATGCAGTCCGTC 7752 32 100.0 35 ................................ TACAACAGGCATTTGTGGCATATTACCCTGTTGAT 7685 32 100.0 36 ................................ TTCTGCCTGCGGGGATACCATATGGAGAACGCCTGC 7617 32 100.0 34 ................................ TTACTGCTGAAATAGATAGTCCTGAGTGGACGCC 7551 32 100.0 33 ................................ AAGGTCCTTTCGGTCTTTAGCTTTAGCTGCAGT 7486 32 100.0 33 ................................ TCAGCCAATGTAATAAGCTTTCTGTCCTCCGTA 7421 32 100.0 33 ................................ TTACATCAACAAGTATGCCAGCCTGCTGGCACA 7356 32 100.0 34 ................................ TGCCTTCCGGGAAGGCTACGTATGCCGGATACCA 7290 32 100.0 34 ................................ TGTATACTGCATATTGGCTACGTGGCTGCTGATT 7224 32 100.0 33 ................................ TTCGTCCCATATCCAAACATCAGAGAGAGAAGG 7159 32 100.0 34 ................................ TTTAGCGTAATTTTCCGCTTCTGCAATAATTTCA 7093 32 100.0 34 ................................ TCTTGTTGTTACAATTTCTTCATCGGTTTTTCCA 7027 32 100.0 33 ................................ TTTCTTATTCATTTTCTTAAAACCCTCCTATAA 6962 32 96.9 35 .......T........................ AGTTAATTCCGCTCTGGTGTTAGTAGCACTGGGGC 6895 32 100.0 36 ................................ AATCTAATGTTGAAGAGTCTCAAGAAGATCTTCAAC 6827 32 100.0 33 ................................ TTCTCTGCTGGTATATCCTGCCCTCTGTTCCGC 6762 32 100.0 33 ................................ AACGGTATAGTTTCTGGATTCAAGGATTGGAAA 6697 32 100.0 35 ................................ CAACTATAACCTCCGCTTTTCGGATGTTTGGATCC 6630 32 100.0 34 ................................ TCACCTGGGCTGCTTGCGCATCTGACAGATCCTC 6564 32 100.0 34 ................................ CCTCTCCGTCCAGCACAGCCAGACTTGTGCTTTT 6498 32 100.0 34 ................................ ATCAATGCCCACCCTGGACATTAGGCCATACACC 6432 32 96.9 34 .............T.................. CTTTAGACGGTTTCTGATATCCTCCCTCCAGATA 6366 32 100.0 32 ................................ ATAAAACTGCGCATCTGTCAGCTTGATATTCA 6302 32 100.0 36 ................................ AGGAACGTAAGAAAGCGAAGTTCACGGCCCTTACCA 6234 32 100.0 35 ................................ CTTAGGAAGGACTATTCTCCCTAAATCATCTACCC 6167 32 100.0 34 ................................ TGTAACCGTAGCGTTTTCCCGCCTTCTCTGGAAT 6101 32 100.0 34 ................................ ATTCCGGCCATAGTAAGGCCGAGAGAACATATTG 6035 32 100.0 35 ................................ CCTGGTGCGGTTGGCGCCGTCCCAGGTGGTTTATG 5968 32 100.0 33 ................................ CTTTCCGCTGAAACTTATTGTTTCTAGGCTCTC 5903 32 100.0 34 ................................ CGTGATTAATTTCACTTTCCTCATCCAGGTGAAG 5837 32 96.9 33 .......................G........ CGTAGTAGTTAGCATCAGCAAGAGCCTTTTCCA 5772 32 96.9 33 .......................G........ AGCACATCCTGCCTTGTTACATCCCCTTCATTG 5707 32 84.4 0 ....................A.AT..C...T. | ========== ====== ====== ====== ================================ ==================================== ================== 35 32 99.2 34 GTCGAGGCTTATACAGCCTCGTGAATTGAAAT # Left flank : TATAATAATGAACATACTTTAAAATGTGTAATACATTTGGCATTTTATGCCGCTGCAGATGATTATGTACTGAAATTTGAACAAACAGCAGGTAAAGGGTATGCAGATTGTATTATGATACCTAAAAAGCCGGATCGGCCAGGGATCATACTGGAATTAAAATATAACAGCAGTGCAGGAAAAGCGATAGCTCAGATTAAAGAAAGAAACTATATAAGAGTTTTTGACAAGGGTATACACGAGGTTTATCTTGTTGGTATAAATTATGACAAAAACGCGAAACATCATCAGTGTATAATTGAATCAGTAAAGAAAAACTGAAAAATACTGGTGCGAATCATAAGTGCCCATAGTTTTGCGGGGGGATTCGCACTTGTATAATGATGAAATATAGGATAATATAAATATAAAATAATATAATAATGACAACTTTCGGGGAGAGTTGTATAATAAGTATGTTATTGGGAGAATTTAAAGGAATTTTGTTGTGTATTTTTGCA # Right flank : CCTACACTAATTACCAATATATTATAATTTAACTCCCATTGCCCACCTACAAAAACACTCAAATACATAAGGAGAAGTACAATGAACAACAACGGAGAACGAAAAAATAAAATAATACCTGACATTATTACAAATTATCAACAACTGGAAAGTTCGATTGTTGAGCAGTTATATATGAAACACGCATTACATGGAACCACGATAGGAACTGAAAGAGAAGAAGTATGGAGCCAGGTGTTTGAAGCGATTTTACCCAAAAAGTTTGTGATAGAACGCTCTGTTTTTATCATTGATTCTCAGAAGAATGTTTCCCATGAGGTTGATCTCGCTATTTTTGATGAGACTTATACTCCATACATATTTCGTTACGGAAGAATTAAGTTTATTCCGATAGAAGCAGTAGCAGCAATTGTAGAATGCAAAAGCCAGAATATTAAAACTGAAACAATAAAAGCCTGGTATGACAGCATAGTAAAGCTGAGAACAGCGACCGGATCCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATACAGCCTCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 10299-10069 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMI01000040.1 Eisenbergiella porci strain WCA-389-WT-23B seq40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10298 32 100.0 35 ................................ CCGTCCGGCTTGTGGCGGATGGTGTCATCCGCACA 10231 32 100.0 34 ................................ AAAGAACATGGCAAAAAATTCTCTTTCCTGTCTT 10165 32 100.0 33 ................................ GGTTGAGAAGGCAGATGCAGAAAGTCTAAATAC 10100 32 75.0 0 ......A......T..T.C.A.T.......TA | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.8 34 GTCGAGGCTTATACAGCCTCGTGGATTGAAAT # Left flank : TTTTGATACAATTACTGATTGTAAATATGTTATTCCTGGGTTTATGTATATAGGAAAGTTATATTGTATTATGATTCAGGATTGTGCAGAACCAGGGAAGGAAATTCAGTGATGAAATATTAAATTTTAAAACAGGAGTATATTACCAGAATCCGGATTATTTGGAATGCTCTTATAGAGAAGGATATTTATTGGATTGAAAAGAATGCGTTTTATTGTTATATATAAATTTTGCCAAATGAATTTACGTGCGATATATATCAATAAAAAGAAAGAATGAAAGAATGAAAGAAATGAGATTGATTAATTCAAATTATTATGTTGATATTGGTGCGAATCGTAAGCTCACATTAATTTGCCGGGGGATTCGCACCGAATTTTTGTAAGTAGTAATGAAATTATAAAATATATTGTAATTGTATAGTGATAAAATTTGATAGATGTTGTATAATTGTTGTGTTAGGATAAAGTTTTGAATAGATTTTTTGTATGTTTTTGCT # Right flank : CTTTTTTCTGTAAGGATAAGGTACAATTGAAAACAAAAATATAAAAAATGTTAATGTACTAAAATAATTGTAAAAAGTAGTGTGAAAAGTTTAAAATGTAATGAGTAAATCAAATAATTTATGGTAAGTCTTTACTTTAAAGTTAGTTTGATTATTGAGAGCGAAAGTCGGTGTGAACGCTTGATTTACTAAATGGAAAATAAATATTTATTTTTAATCGTTTTCACACTTGTTAGTTAAGCGAATCAAGAAATGTCTATTGGACATACTTTGATATCTGTAGTAAACTGAGTCCACTGAAACAATGTTAATTTTCGTTAGTGTTAGAAGAGTTAACTCATAAATGGAGCGAATTTAATTATGCAGGATTATTTTTATTTTTTGAACCGAAAAAATGTAGCGAATGGTTTTCGTGAATCGCTTAATAGTCGTTTTTTTGTTGATAAATCCATGCTTATACAGACTATTAATGAAAAGATTTCAACCAAAGAAAAGTGGGT # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATACAGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //