Array 1 62722-62388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIHO010000025.1 Escherichia coli strain SH6R NODE_25_length_71634_cov_118.404615, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62721 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 62660 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 62599 29 100.0 32 ............................. GTTTACCGCCTCGCAGAGGCGCTGGCAGATCC 62538 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 62477 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 62416 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18380-16948 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIHO010000014.1 Escherichia coli strain SH6R NODE_14_length_113092_cov_111.326638, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18379 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 18318 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 18257 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 18196 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 18135 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 18074 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 18013 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 17952 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 17891 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 17830 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 17769 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 17708 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 17647 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 17586 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 17525 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 17464 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 17403 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 17342 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 17281 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 17220 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 17159 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 17098 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 17037 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 16976 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //