Array 1 190084-188467 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAZB01000019.1 Salmonella enterica subsp. enterica serovar Derby strain 07CR553 NODE_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 190083 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 190022 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 189960 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 189899 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 189838 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 189777 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 189716 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 189655 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 189594 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 189533 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 189472 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 189411 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 189350 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 189289 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 189228 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 189167 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 189106 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 189045 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 188984 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 188923 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 188862 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 188801 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 188740 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 188679 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 188618 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 188557 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 188496 29 93.1 0 A...........T................ | A [188469] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 207410-206772 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAZB01000019.1 Salmonella enterica subsp. enterica serovar Derby strain 07CR553 NODE_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 207409 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 207348 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 207287 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 207226 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 207165 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 207104 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 207043 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 206982 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 206921 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 206860 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 206799 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //