Array 1 160009-159444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBW010000001.1 Lactiplantibacillus pentosus strain 7.2.20 assembly_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 160008 36 100.0 31 .................................... TCAGCAAGCTCACCAGTCTTGTTGTCAGCGA 159941 36 100.0 30 .................................... CGCCGCCCGTGTAATCCTTGAATCGTGGGC 159875 36 100.0 30 .................................... TCCGCAACTCGTTCGATGGCCGTTGATCAA 159809 36 100.0 30 .................................... CCAGAACACGATACCCAATCACAATTGAGA 159743 36 100.0 30 .................................... TGAGTATCCTTTATAAACATCAATCGTAAT 159677 36 100.0 30 .................................... TACAGCCTACGAGTTGGAGCGCGACAAGTA 159611 36 100.0 30 .................................... AAATATATGGAAGGTATCTCGCGATATATG 159545 36 100.0 30 .................................... ACCCAGTATTCAGAATGCCAATCATACGTG 159479 36 94.4 0 ...............T...................T | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.4 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCCGTCTTGGATCAAAGCCGGGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTAGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGCTTTTGAACAGCAAGTGGCAGATTTAGGCACTACGGTTATTGTCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGGATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : AAAGAGATAGAGGCAGCCAGAGGGCCTGGGGTCTTGAATAGAGACCCATTAGGTAGGGCTCAACGCACCAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGTAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAACCAAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCGAGTCCTGAAATCAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 68081-68959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBW010000016.1 Lactiplantibacillus pentosus strain 7.2.20 assembly_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68081 28 100.0 33 ............................ CCATGGCTAGGCCCCCTCATAGAATTTCGTGTT 68142 28 100.0 33 ............................ TAAGATGATCGAGTATTACCAAACCAGTCACAT 68203 28 100.0 33 ............................ TTAATCCCGCCGCGTCTTCGACCTTCATGTCGG 68264 28 100.0 33 ............................ CGTTTGCCAGGCTTTACTGGAGTCGTTCAATTC 68325 28 100.0 33 ............................ TACGCCGAAAGACGCGAACAACCACGCGATAGA 68386 28 100.0 33 ............................ CACGTTTAAACTTGAGCGCGTCGCGATTCTTGA 68447 28 100.0 33 ............................ CTGTATGGGGTCAGGTAGTACGGGTGTCAGCTG 68508 28 100.0 33 ............................ CTAATTCACGATTCTGGTCGCTGTGGTCAAGTA 68569 28 96.4 33 ..........C................. CTAATTCACGATTCTGGTCGCTGTGGTCAAGTA 68630 28 96.4 33 ..........C................. TAGATAGCTTGCATGAGTGTGCCGTAGTCCGTG 68691 28 96.4 33 ..........C................. TTATACCATACACCGAAAATGTGAAATAATAAT 68752 28 92.9 33 ..........C............A.... TAATCCAGCTCCAATTGGTTGGACGTTAAATGC 68813 27 92.9 33 .....T...........-.......... CGTGCCGGACTGCTCAACGGTCATAATGCTACG 68873 28 92.9 32 ...........A...........A.... AATTAAACTATTTTTTGATGATACTTGCAGTG 68933 27 75.0 0 A..-.....A.....A.A...T...C.. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 96.2 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : ATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGGATTTTTGGCGAAATTGCCACTGTTTGATGGAAACAACTCAGAATAATATCACTAGTAGTAGTGAACCGCGCCGCATAAACAGATTTAACGGTAATTTTATAGCCATTTTTGGCTTTATCGGTATTGTATGACCATTTAGACCGGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCTTTTTTCAATGGCAATGCTAATTCAACTAAAATGATAATCACGCCATACTTTCATGGAAGATATTTTAGACAATCGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTCTACCTGCCTATCGTACTCACAAAAGTAAAACGTAGCGTTTTTGGAATCAAATCGACCAGAAGTTGACAATGAATTGGTTGTCCACGAAAAAATTAGAGTTCTTTCAAACTCATTGTTACCCTGAAACAACAGGTCATTAAAAATAATAACCACTGCTGGAGATTAGCCTATAAAATGGTTATTGCTTTGGATTATGTAATCAAGTGTTATGAATTTGAATCCGAGCTACATTTGCCAGGGAACTTTATAAAAGATAAAAATGCAATCAGGTATTTCAGAGCGCAGATTTCAAATTAGAATACCTATAAGGAATACCAAATTCATATCGGTAGTACACTATTCTTCACTAAGCTTCCTGGGAAAGCCTTGGTCATGTAGTTTACGACCATATTCGGGTGCCACTAAAAGCTAATAATTTTGGAGGAGAGTACTGAAAAATGAAAAAAGTTACAGTTTTTCTCGTCATAATCTTTGCGATTGCAATATCCATACAATAC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28298-28807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBW010000003.1 Lactiplantibacillus pentosus strain 7.2.20 assembly_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 28298 29 100.0 32 ............................. TTATGGACACTGTGCTATCGCTGCCACAACAT 28359 29 100.0 32 ............................. GATGTGCCCATCTACTACTTGATAAGTTCTCG 28420 29 100.0 32 ............................. GTTCATTTTGCTCGATATTTTTCGTTGGTTTT 28481 28 86.2 35 .....A.........A..A......-... TTAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 28544 29 86.2 33 ..G........A...A............T TAACACGCCGGTAGTCCCGTTTTTGAGGGATTG 28606 29 86.2 32 ..G............AT....C....... ATGACTGCGCACTATACTGAGTCAGTGCGACT 28667 29 75.9 32 ..T.....T......A...AA.....T.G AGGGGCACTCTCGTGAGAAGTGTAGACGCTAG 28728 29 79.3 22 ..G...TT...........A...C....T CGCTGAATCGATATCCGCCATT Deletion [28779] 28779 28 75.9 0 T..........A...A......A.-..TT | C [28800] ========== ====== ====== ====== ============================= =================================== ================== 9 29 87.7 31 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : ATATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAACTGGAACACCAGCGATAAACGCTTGTACGGCGTGAAATATATGGCTAGTCTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGAATGCTCCCCAAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGAGTAGCAAGCTATTGGATTGATTTGTTAAAATTCCGGATACAGGTCAAACATTCACGCCTATTAAACGTGGTTGTAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTTATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTACTATCGCCTCTAATATATACTGGGATATTTCAGCATTTATACAGAGCGATGAACAACATCACTTCATCAACAGAGCAATTTGACTTCTATGAGAACCAACGGCAAAAAATTTAAGTTCACACCACCAATCTTCCTTGTGAATCAAGCTTCCATTACACAAACAGTGCATTTCTCAGATGTGTTCTAAATTTTTAGTCTTTCTAACTTATTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTCTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATAGTTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCTTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGTATT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31425-31819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBW010000003.1 Lactiplantibacillus pentosus strain 7.2.20 assembly_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31425 29 100.0 32 ............................. AATTTACGCTATCTAAGTTTATCAAACAAAAT 31486 29 96.6 32 ............................C GTGAGAACAGTTCACCACTCCATGAATCCCAC 31547 29 100.0 32 ............................. GTGGCAAACAACTGGACGCTAGCCTTGGGTGT 31608 29 96.6 32 .........................A... CGTTTCATCAAATTTGTCTCTGGGAGGGTTTA 31669 29 79.3 32 ..A.......T.C..A.........A..C CATATTGATTCAAGTAAGGTACGTCAAGCTAC 31730 29 79.3 32 ..A.......T..C.A.........A..C GAGCTACTGAGGAACTGGAGGAGAAACTAGAT 31791 29 75.9 0 T........A.A...A....A.....TT. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 89.7 32 CTGTTCCCCGCGTATGCGGGGGTGATCCT # Left flank : AGTTATTTGTGCGTGGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATCTAGACCTCACGATTGTTAAGCGCTTACAATTTATTGTTAATATTGCTGACAATCGTGAATTATACTGACAAGAAATCATCGACTTTCATCCGTACATTTTCGTCAGAACCCTAAACTGCTTGTAAGCGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTAATTCTATACTTCTAATATTAGCATTCAATGTTTGAATAAACATCTATTTTTGGAAGGACTTCGATGGATTTTTGATAAATTATGACGACTAGTTTGTATCAAGACAGTCTGATATGTCCAGTTTTGAGGTTTCCCAATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGAGACTTAGCCAATTTTGAATTGTTGATATACCGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGGCAAAGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATATCCCGGATACTGGGATATTCCTGGTGGTTTAGCCATAAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTGAAAATTAGCAGAATTATTTGTGAAGACTCAGTTCTTGATACAGCAAAAATGCGCGTGTTTACAACATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTATTTTTGTAAATTCACGGCAAACTTTGAATAAAGTAAAGGTCGTACCGTATTTAGAGAAAGTACTGTTGCAGTTTCTATAGATTAGGGAGAGTTGTACGGTGATAACTACACTTGAATGCGCATAGAAAGAATTTATAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //