Array 1 136775-137109 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBY01000003.1 Parvibacter caecicola strain DSM 22242 DSM22242T_contig_003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================== ================== 136775 25 100.0 37 ......................... GAGGACGGGGCCAACGGAATTCCGGTCGAGGAGCTAC 136837 25 88.0 37 ...........C.G.........T. AATAGACAACCCGGCGACACGCCGGCAGGCCGTTTGC 136899 25 92.0 37 .............GC.......... GAGGGCTAGGTGCAACGCCGCATGGCCGGGGGTTTGC 136961 25 88.0 37 ...A.........G.T......... AAAGGTGACGGGCGAGACAAGACAATGCAAAGCTTGA 137023 25 100.0 37 ......................... GAGGGCGGGTTTAGCGGGGATCCAGCCGGAGGTTTGA 137085 25 96.0 0 .............G........... | ========== ====== ====== ====== ========================= ===================================== ================== 6 25 94.0 37 CCGGACAAGCGGGCTAATCCGGGCA # Left flank : CCGAGATGGCATCCTCCGAGGCGGCACCTCTCGAAACGGCGGCCGCCGGAACAGCGCTCCCTGAGATGGTGGTTGTCGAGGCGTTGCTTGCCAGAGCAGCTCCCCCCGAGATAGCGCCTCCCGAGACGGCATCTGCCGATCCAACGTTTGCCAAGACGGCATCCTCCGAAAAAGGACCCCTCTCAAAACCCTGCATTTCGCTCACTTGCTCCCCTTTGTCATCGACCCCTTTTCCAGCAATTATACCGAAGCCCTCCCAACGGCCATCGCCGTCTACCTCTCAGCAGAAAACAAGCTCGGGAAATTCACAGCCCACCCCTCCGCCGCTGCCACGAAGCGCTTTGGCGGAAATAGGCGCCTATTCCTGCCGCAAGACCAATCGACACGCCCCCCAACCCAAGTCGTGGCGGAACTAGGCGCCTATTTCTGCCAATGCCCAGCATAACGCTCTCCCCGTTCCCAACCGTGGCGGAAATAGGGGCCTATTTCCGCCACAGCGC # Right flank : AGAAGCGGAAGGGAGAGGTGGGTGTCGGCCGAGGACGGGAAGGAGGCCGGACGCAAGGACGCCCCCGCCGGAGGTGGCGAGGGCGCTGCGCGGGGAGGGAGGTTGTTGCGGGCGGACCGGGGGCCGGCCCTCAAGCGCACTGGGCCTGGCGTCCTTCCGGCATCAGGCAGGCGCACCGACCCGACCCTTCGTAGGGCAGAGATTCTATCTCTGCCTGAGCGGCGAGTCGATCCGGGGCCCCGGTCGGCCGGGCGACTGCCGAGCTGCCGCCCGTCGGCGGGCCGGTTCGGACAGGGGCGCCGCCGGGGGCACCGGGCCGGACGCAAGGACGCCCCCGCCGGAGGTGGCGAGGGCGCTGCGCGGGGAGGGAGGTTGTCGCGGGAGGCCGGACCGGCCGCCCTCTCGGCATCGGGCGGATGCGGGCTACTTGCCCCCGGCGGGCTTGAGGGGCAGGAGCTTCAGCCCCAGGAAGAAGATGAGGAAGGACAGGCCGACGACCC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGACAAGCGGGCTAATCCGGGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 15-435 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBY01000029.1 Parvibacter caecicola strain DSM 22242 DSM22242T_contig_029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================= ================== 15 28 100.0 34 ............................ AGCCTCCTGCGGTGCGGCGTTGCGCCTAGCCCTC 77 28 100.0 34 ............................ GACCCCCGGCCGGATTCCCGCCAAACCCGCCCTC 139 28 92.9 34 ...........G......T......... AACGGCCCGCCGGCGTGTCGCCGAGTTGTCTATT 201 28 85.7 34 ..A......A........T......C.. GGCGGGGTACTGCTTTGTCTCGTCCGTCGCCCTT 263 28 92.9 55 ..............T..A.......... GAGGGGTAGCTGCGGGGCGTTTGTTCTGCGGAAAGCGCGCGGATCGCTTGCGTTT 346 28 100.0 34 ............................ GAGTGCCTGCGGGAGCCCCGCCGAGCGCGCCCCC 408 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ======================================================= ================== 7 28 95.4 38 TGCCCGGATTACCCCGCTAGTCCGGGCA # Left flank : CCCCCTTCCGCTTCT # Right flank : GGCGATTTGGCCCGGTTGCCGGCACACGCTCTCTTCATATTATGGACACAGACGCAGGTTTTCTCATACTAATCAGAAACGACCAGTTCACAGTGGCGCCATCAGGCTGGCGCGGCAATTCAAAGCTGCGTAGGATGCCTCTTGCATGCCTTATTTGTGGACGTTATAAGAATCCTCATATTTCGCATGCATGAAACTTGACAATACAAGACTTAGATTTTATATTGTCGAGCATCAAATAAAACTCTACATGCACAATGTGAAAGTGAGGAAAGAGAAATGGCTAAGATTCTCGGTATCGACTTGGGCACCACGAATTCCGCCATGGCGGTGATGGAGGGCTCCGAGCCGGAGATCCTGGTAAACGCTGAAGGCGACCGCACTACTCCCTCCGTTGAAGGTTTCCGCAAAGACGGCGAGCGCGTGGTGGGCAAGGCCGCTAAGAACCAGGCGGTTACCAATCCTGAAAACACCGTTGCTTCCGTGAAGCGTTTCATCGG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCCCGGATTACCCCGCTAGTCCGGGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 120223-119927 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBY01000005.1 Parvibacter caecicola strain DSM 22242 DSM22242T_contig_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================== ================== 120222 28 100.0 34 ............................ AGCCTCCTGCCGTGCGGCGTTGCGCCTACCCCTC 120160 28 100.0 54 ............................ GAGTGCCGGCTGCGGGGCGCTTGTCCTGCGGAAAGCGCGCGGGTCGCTTGCGTT 120078 28 100.0 34 ............................ GAGTGCCTGCGGGAGCCCCGCCGAGCGCGCCCCC 120016 28 89.3 34 .........A........T......T.. AGCTGCGCGTTGCTTTGTCTCGCCCGTTGCCTTC 119954 28 96.4 0 ..................T......... | ========== ====== ====== ====== ============================ ====================================================== ================== 5 28 97.1 39 TGCCCGGATTACCCCGCTAGTCCGGGCA # Left flank : GCCCGCCGGGGACGAGTAGCCCGCATCTGCCCGATGCCGAGAGGGCGGCCGGCCCGAAGCGCTCGACGGCTGGCCGCCCCTCTGAGGGCTGACAGGGGACGGGGATAATGTCAGGCTCCCGCCCGCCCCTCCGATGGGTGTCAGGGGGACGTTCGCTTTTGACACGCGAAGAAGCGCTGCCGGGCCGATGGCCAGCAACGTGCGTCAAAAGTGAACGTCCCCCTGGCACGGGAAAGTGAACGTCACCCTGACACCCCCTGACACGGGGAGGGGTCCCCGGAACCCGACGTTGTCCTCGCCCCCTGTCATGCGGCGGCCCGCCCCTCCGGCCCGCCGCCCGGGCAGAGATAGAATCTCTGCCCTACGAACGGCCGTGTCGATGCGCTCGGCGCGCAACAGCCTCCCTTCCCATGCGGCGCCCCCGCCATCTCCGGCGGGGGCGCCCTTGCGTCCGGCCCCCTTCCCGCCCCTGGCCGACGCCCGGCTGTGCCCTCCGTCTC # Right flank : CCGTGGCGGAAATAGGCGCCTATTTCCGCCACAGCTCAGGTTTGGAGGAGGTTTCGCGGGGCCCGTGGCAGGAATAGGCGCCTAGTTCTGCCAAAGCCGCGGAGTTGGAAGGGCCGTTGCGCCTTGCTGGCAGGAATAGGCCCCTATTTCCGCCACGGCGACGGCTGGGAGCGTCCTGGGCGGCTCTGTTGGCAGGAATAGGACCCTAGTTCTGCCATGGCTGGGGATTTGGGAGGGCTTTGCCGCCTTGCTGGCAGGAATAGGCGCCTATTTCTGCCATGGGGGCGGTGAGAGTGGACTGGCGGGGAGGGGCTGTCGGCTGCGGCCGGTGCGGGGCTTTTGGGTTGGGCTGGCCTGTGCGGCCGTTTTGGGGCTTTACGGTTGGGGCTGGCCTGTGCGGCTGGTGCGGAGGGGGGGCGCCTGCGCGGGGCTTCCAGGCTGTTGTGTGGGCGGTGTGTGGCGGCGGTGAAGACTGGGTGAATGCTGAAGTTTTGCTGTGA # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.19, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCCCGGATTACCCCGCTAGTCCGGGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 79223-79499 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBY01000009.1 Parvibacter caecicola strain DSM 22242 DSM22242T_contig_009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79223 29 100.0 33 ............................. AGCCTCCTGCCGTGCGGCGTTGTGCCTACCCCT 79285 29 100.0 33 ............................. GAGTGCCTGCGGGAGCCCCGCCGAGCGCGCCCC 79347 29 100.0 33 ............................. AGGGGCCCGCCGGCGTGTCGCCGGGTTGTCTAT 79409 29 86.2 33 T..A...............T......C.. GGCGGGGTACTGCTTCGTCTCGCCCGTCGCCTT 79471 29 93.1 0 ...................T........G | ========== ====== ====== ====== ============================= ================================= ================== 5 29 95.9 33 CTGCCCGGATTACCCCGCTAGTCCGGGCA # Left flank : AGTGCTGTTTTAGCGCGGGGCATAGAGGCTCGTTGGCTCTCACAAAAGGTTAAGACGCAGAAGGGGGCCCCAACCGGAGCGCCCCTTCTGGTTACTGCCGGCGCAATGTCCGGCAGTGGCTTGCTTGCGAAATTCGCCGTTTAGTCCTCGGCGATCTCGGGGATGGCGCCCATGGGGCACTCTTCCACGCAGTCGCCGCAGGCAACGCAGGCATCCTCGTTCACGGCCTCGGCCACGCCGTTCACAACTTCCAGCACCTCTTGGGGGCAGGCATCGACGCAAATGCCGCAGCCAATGCACTCATCGGTTTCAATAACGGGATGGGACATGGTTTCTCCTCTTTTCGGGGTTCACTTGCGAAGGCATTTTCAGCGCTTCGGCTGTTCGTAGCGCAAGATACCATTACATATCCCGCGCGCAAGGGAGATTCACAATTTTTCGGCAGGAAGGATGAAAGCCCGTAACCCAAGCTCGTCCCCGCCGGCCAGCGGCGCCCGTCT # Right flank : GCGGTGGCGGAAATAGGCGCCTATTTCCGCCACGGCTCGGGTTCAGAGGAGGTTTCGCGGGGCCCCTGGCAGGAATAGGCGCCTATTCCTGCCAAAGTCGCGGAGTTGGAGGAGTTGTGGTGCTTTGCTGGCAAGAATAGGCCGCTATTTCCGCCACGGCTCGGAGAAAAGGGGTGTTTTGCCACGTGCTGGCGGAAACAAGCTCCTAGTTCCGCCAGGGACGCCTCGGGCATCTTTTCTGTGCGGACGCGCCTCCACTGCGCGCCCGTGCGACGGGCGTTAATCCAAGTGAAACTTGCCGACGCCAATTTCGCGCGGCCGAGCAAAGATCCAGCGCAGCCCGTACCTGACAAACTGCTCTGGCGAAATGGAGCAGTCGTCTTCGAGCCAATGCATGATGGAGCCTATGCTGGCGCACGTTGTGCTGTAGGCGGCGAACTCCTTCTCCTCTTCGCTCATGTCGGGCGAGTCGAAGCTCTCGCGGTGGATGATCAGCAGCT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCCCGGATTACCCCGCTAGTCCGGGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //