Array 1 5068-4861 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPQ01000031.1 Vibrio cholerae strain A12JL4W4 NODE_101_length_78733_cov_32.464775, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 5067 27 100.0 33 ........................... AGAAATGCGCAACTTAACTATCGCTCAGCCTCT 5007 27 100.0 33 ........................... ATCGCCACTCTATTCCTGCTGCATCGACTGCAT 4947 27 100.0 33 ........................... AAGACGAGAAAGCCTGTCTATCTGTTCAATGAT 4887 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================= ================== 4 27 100.0 33 GTGTTCTGCCGAATAGGCAGCCAAGAA # Left flank : TCATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGCAGAAGTAAGATTTGTTCGTAATCAGACGATTGGGAAAAACTTTTTGGGTTCCAAAAAGCGTCGAATCAAACGTAGCATGGCTAGGGCCGAGTTATTTGGTATTGAACAATCATTACCAGTAGCGAATGAAGACCGTGTCATTGATAGTTTTCATCGAATCCCTATTTCTAGCGGTTCCTCACGGCAGGATTTTATTCTGTTTATTGAAAAGGAACTCGCAGCTGAGCGTGCTGAATCTGGCTTTAATAGCTATGGTTTTGCAACCAATCAAGAAAAAAGAGCGACGGTACCTGACTTACGTTTTAACCCTTTTGGCGAAGGCTCTTTTTAGTTCAGTAGAAACAAAGAGTTACAGCAGTGAAAATAAAAAGGGTGTTTTTACCAAGTTGTGACTTTAAGCAAGAATAATCAGATTCTTAGTGATTATATTTTATA # Right flank : TAGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTAAGTTTTTGGCTTGGTGGTTTTTTGTTTTACAGCTTGTGTTGTGACGGCGGATTGGTTGTGGCCATTTAAGAACTGCAACGCACTTTTGCCCCTAAGTTTGTTTCCACGCATTCGTTCTAACGACAGTCTAGCTGATTTTGCTATACTGCAACTAATCAAAATCTTCTGTCAGGTTGTATGCGATGAGCAAGAAAAAGTTGACCGAAAAAGTGCTGTTAGAAGGTATGACTCCTTATAATACTCACAGTGATTTGCTCGCCAAGACCGAAACAAAGACTGATTGGATGTCTTTCGCCGACGAGGTTGAATTGGTTACACATGATTTTATGACTAACCGAAATGAGGTTTTCGATTAGCCTAGTTCCGATTTGGTGAACCCAGATATTTTTCTTTCAAATCTCAAATTAGCGCTTGATAACCTTCCAGATGGTGATAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGAATAGGCAGCCAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 6236-9503 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPQ01000043.1 Vibrio cholerae strain A12JL4W4 NODE_137_length_54174_cov_28.071344, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6236 28 100.0 32 ............................ TTGACCCTGCCGGAGTGTTTACTTCTATCAAT 6296 28 100.0 32 ............................ TAATAAATCGAGTAAGAATTGCATTATTTATC 6356 28 100.0 32 ............................ ATTATTTGAGCCGAAATTGACCGAACCAAACC 6416 28 100.0 32 ............................ TGTTCTTGTTGTTGCGGCTGTGGCTTGTCTTT 6476 28 100.0 32 ............................ ACAACGCCTAGCGAGGTAATCGAGTTAATGCG 6536 28 100.0 32 ............................ TTGGCATACTAATATCAATGTATGTTGGTCTT 6596 28 100.0 32 ............................ ACAAGGCGGCATGACACCAGAACAGCTTGCAG 6656 28 100.0 32 ............................ ATAGTGATGGCGGTTTCCATGGTTGAGTTTTT 6716 28 100.0 32 ............................ TCAATCAGTTCTCCGGCTGTGGCTACGTGCAT 6776 28 100.0 32 ............................ TGAAGATTGTTTCTCAGTTTGAAATGCAGAGA 6836 28 100.0 32 ............................ AATATGCGGTCAACTTCAATATCAGTGCTGAT 6896 28 100.0 32 ............................ TTACCGATAAGCCGGACACGATTAAAAGACAC 6956 28 100.0 32 ............................ GTATTCGTTGGCTATACCCGCAGCAAAACAGA 7016 28 100.0 32 ............................ AAGCCAGTATTGAGCGCGGAGCTTTCCGGCTG 7076 28 100.0 32 ............................ TTTATCATCCTTCATTGGCATGGCATAAAACG 7136 28 100.0 32 ............................ GCAGGAATGCTGCGGACTACTGATCCAAGTAG 7196 28 100.0 32 ............................ CTGACGGATTCCGTTTAATTTCTGGCTCAATC 7256 28 100.0 32 ............................ GTTTGAAGAATTCCGCCACGCTTACTGCCACC 7316 28 100.0 32 ............................ TAACAAGCTCACCGTCAACTAGGTTGTATTCA 7376 28 100.0 32 ............................ ATGAAATAACGCCATGAGTCATTGTGTGCCGC 7436 28 100.0 32 ............................ TTGCTCTTTTTTGAGATAAGCCGTGCGATTCG 7496 28 100.0 32 ............................ ACACCGGACGGCGCAGCGTGACCGCCTGTTAA 7556 28 100.0 32 ............................ CCTATCGCTCAACAGTGATGCAGGTACGGCGC 7616 28 100.0 32 ............................ ATAATCGCCACACTGGACGGAACTGGCTTTGC 7676 28 100.0 32 ............................ CGTTTTTAGTGGACGTGATGCCAATCGCTGAA 7736 28 100.0 32 ............................ AGCAGCATTAGTTCAATCAACTCATTAAGCTC 7796 28 100.0 32 ............................ ACTTAAGTAAGCACGGCTAACCGGAGTAACAT 7856 28 100.0 32 ............................ GCACCATTGGAAAAACCAAGCTGCACGGTATT 7916 28 100.0 32 ............................ TCTCTGCACAAGGTTAAACCCTACCCGTGGTT 7976 28 100.0 32 ............................ GAAAATATCAAAAGCTAAAAGGTTCTCAGCGA 8036 28 100.0 32 ............................ TCTATGCGGGGCGACATGGATGCAGACTCTTC 8096 28 100.0 32 ............................ ATCAGAAGCCATTCGTATAGTTCAAACGATAC 8156 28 100.0 32 ............................ TGACCGACGATTTTAGCGACACGCTTGTCAGA 8216 28 100.0 32 ............................ TCTCGCCCATTGGTTTTGCAATCGCATGCCAT 8276 28 100.0 32 ............................ TTTCTTTAGGAACTGGAGAAGCTTGGCCAGAA 8336 28 100.0 32 ............................ GTACCGATGATAACGAGATCTCTTAAACCTGC 8396 28 100.0 32 ............................ AGATTGATATTTATCTGAGACATAGGCGTGAA 8456 28 100.0 32 ............................ ATTCAGCAATGCGTCAACAAAAAGCTGTTAAC 8516 28 100.0 32 ............................ TTCTACAGTTCCATGACGCAAAACGGCATCTA 8576 28 100.0 32 ............................ AAGCGGGGTTGTTGCTGTACGCCATTTTAAAC 8636 28 100.0 32 ............................ GTGAACGTTGATCTCCTTTGGTGGATCAAACT 8696 28 100.0 32 ............................ AGCACGAACTTGACGCCGAAGATTTCCACCTT 8756 28 100.0 32 ............................ TAAAGCAAGCACTCAAAGAGTGCAATCAACAA 8816 28 100.0 32 ............................ TTTATCACATAGATTAAGCAGCAATAAAAACT 8876 28 100.0 32 ............................ CGACGCAATGCGCGGCTGATACTCGATCAACG 8936 28 100.0 32 ............................ AGACTTAATACTCGATATCCCGACCCGACGAT 8996 28 100.0 32 ............................ AGTGTGGCGGCAGGCGCTTCATTTGCTGCTTA 9056 28 100.0 32 ............................ TTCAATCTCTGGCGTTTGAATGATGGTTCCTG 9116 28 100.0 32 ............................ AGAGAGCGTCAAACCACCCTTACCTACAACGT 9176 28 100.0 32 ............................ TTTACTGCAAAAGAAATAGGGCAGTTTTTATT 9236 28 96.4 32 ...........T................ TCTCTCGCCCCCATTTTTGCCGCATCCGCATA 9296 28 96.4 32 ...........T................ ACGAGCAGGACAGTATTTACACCACTTACCTG 9356 28 96.4 32 ...........T................ TGAGCAAGTGACGTCGGTTAAGCCTGTTATTT 9416 28 96.4 32 ...........T................ TCTTCAAACTTCCCGAAGTGAAAGACGTTAAA 9476 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================ ================== 55 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGTCAGCGTTGTGTAACTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5493-10442 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPQ01000046.1 Vibrio cholerae strain A12JL4W4 NODE_167_length_24263_cov_33.038864, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5493 28 100.0 32 ............................ GTGTGTTGAGCATTCACAAAAACTTTGTTCGA 5553 28 100.0 32 ............................ CTTGTTATATCAGTAATTAAAAATGAAAGTGG 5613 28 100.0 32 ............................ TTTAGCCGTCATTACCGTGCTCCCTTAGTACG 5673 28 100.0 32 ............................ AATCGCCTTCATCGGCTGATTTGCGAATGGAC 5733 28 100.0 33 ............................ AAAAGCGGAAGTTTCATAAGCATTTGAATTTAT 5794 28 100.0 32 ............................ ACTCGTTTGATGGCCGACAGTGGACGGGTCAG 5854 28 100.0 32 ............................ GAGAACCCGAACCCTGAACCACCTAGCCCGAA 5914 28 100.0 32 ............................ TTATCACGGGCGGGGCGATAGTCGGCCAAGAA 5974 28 100.0 32 ............................ CGTTTCGGGGTTGTATTCTTGACCGTCTGAAC 6034 28 100.0 32 ............................ ATTTGGCTGCTGATCGACCTGTCGTTGAGCCA 6094 28 100.0 32 ............................ ATAAATTGGCAGTATTAGCCACCCCAGCAGCG 6154 28 100.0 32 ............................ GATATTATTACCAACAAGCGCACTTTGATGAC 6214 28 100.0 32 ............................ TTATCTATGATTAAAGACGCTCATGACCGCCT 6274 28 100.0 32 ............................ ATCATCTCCAAGATGGTGAAAGAAAAGGTTGA 6334 28 100.0 32 ............................ TTGAGCCGGGTTCGAGATGTTCAGCGTTTTCA 6394 28 100.0 32 ............................ TAGGAAGATTTCGTTTCTTTTCTCTGGCGTAA 6454 28 100.0 32 ............................ TATCTAGCGTGAACTCGTTTAGCTCCCAATCT 6514 28 100.0 33 ............................ TTTCAGCTCTTTAATGTTCCAGCGCTTTTCCAT 6575 28 100.0 32 ............................ GCTTGGTGGGTGATGATTATGTTCAGCAGCTT 6635 28 100.0 32 ............................ GGTTGGATTCTCTATCGCAATAAATTCGCAGT 6695 28 100.0 32 ............................ ACTTCTGATGCTCGGCGAGCATGAACAGGTGA 6755 28 100.0 32 ............................ GTCAGCTACTTAAAGCCGATCCTTGAAAGCCT 6815 28 100.0 32 ............................ GATCAAATCTTCAACATAAAGAGATCCCCTAA 6875 28 100.0 32 ............................ TTGTTAGAAGCTTATAACGCTGGTGGAGTACC 6935 28 100.0 32 ............................ TCGTTCGCCGCCTTTTGTGCTGTTATCAACGT 6995 28 100.0 32 ............................ GTTAAATGTTGACTTTAAGAGCGGTTCAATTG 7055 28 100.0 32 ............................ ATCATCGGGATGCGCTTTGTAAAACCAAAACG 7115 28 100.0 32 ............................ ACACTGCTAAAAGCCGAGGCATTTAAGCTCAC 7175 28 100.0 32 ............................ GATCTCAATATCGATCAGACTTTTGAAATGGA 7235 28 100.0 32 ............................ AAAATTGCCAGCTCTAAATCTTTGCGGGCTAC 7295 28 100.0 32 ............................ ACAATTTTCACCTTAAAGTTTGATTTCTGTAT 7355 28 100.0 32 ............................ GTTAATCCTGCTGATTAACCCCTCAGTCTAGT 7415 28 100.0 32 ............................ TTTTTTTGCATACTCACCGAAATACTCCGCAC 7475 28 100.0 32 ............................ ATTGCAGCCCGCGAGAAAATCCAGCTTGAAAA 7535 28 100.0 32 ............................ GAATACCCGAATTTTATAAAGAAGAAGATAAC 7595 28 100.0 32 ............................ ACTTCAAATACTCGCTATTTTATTTACGAATT 7655 28 100.0 32 ............................ TATTCTTAGTTCGTTGCTCATGATTTCCGCCT 7715 28 100.0 32 ............................ AGTCATTTTTTAAGGCATTAGAAAAGCCGCTT 7775 28 100.0 32 ............................ AATATTGGCCAGCGTTGCTTTACCATCAGCCA 7835 28 100.0 32 ............................ AAATACTCAGACGCTCCAGCATGGAAAAACAA 7895 28 100.0 32 ............................ TACATCGGTCAGCGTATCAATATCTTGATTGC 7955 28 100.0 32 ............................ TACGCATGACAGTATCAATGCCGTTTTTCAAC 8015 28 100.0 32 ............................ TTTTTCCCACCCCATTTGCTCGAAAGTTCTTA 8075 28 100.0 32 ............................ TCAAACGTCCGAAGAGTTCTTGATTGCACAAG 8135 28 100.0 32 ............................ GGATAAACGCTATATCGATATCAAAGTCATCG 8195 28 100.0 32 ............................ GCGATCACACCTCGACCGTACCTTGGCTATTT 8255 28 100.0 32 ............................ AAAGGAACTGGAGTTTAACGGCGAAGCGGTAT 8315 28 100.0 32 ............................ TTTAGATACTAAGTTGTTTAGCTGCTGAACGG 8375 28 100.0 32 ............................ TATATTATGTTCAGCTGGGGACATTGGCCCTC 8435 28 100.0 32 ............................ TTCAATAGCTGACTTTGGAATAAAGATTGATG 8495 28 100.0 32 ............................ ATACGGTGAGACTTACTATTTTGATTCAGCCG 8555 28 100.0 32 ............................ TTCTTTACTTGCGGCATTAGCTACCCGTGTTG 8615 28 100.0 32 ............................ TGACGCTACCGGAATTTTTTGATTGATTGACG 8675 28 96.4 32 ...T........................ AGTAATGAGCATTAACGGCGGCTCAGATAATG 8735 28 100.0 32 ............................ TAGAAACAGGCGGCCTCAATGGTCGCCGCAGC 8795 28 100.0 32 ............................ TTTTTGCTTTCTGGCGCGTTAGAGAGCGTTAC 8855 28 100.0 32 ............................ TGAAACTCTTGCAATGTTAGATATTGCGGCAT 8915 28 100.0 32 ............................ CATATCAAGCAAGCGCTCGATGGTTTTAATTG 8975 28 100.0 32 ............................ AATACTCCATCATCGCTCAGCGCTTTGGTGAT 9035 28 100.0 32 ............................ TCAAGCCCACAACTACATTCCAGATCTTGAGC 9095 28 100.0 32 ............................ TCTTGCTTTAGAAACTCGCCGTTCTCTTTGCG 9155 28 100.0 32 ............................ TCCCCATACTTAATGCGCTCTAAATGGCCGAT 9215 28 100.0 32 ............................ ACTGCAGCGCCGTGTCGATTAATGTCCATGCC 9275 28 100.0 32 ............................ TCGCAGGCGTTCATGTTATGAGGTTGATTGAT 9335 28 100.0 32 ............................ TTGCTACCATCGAGCTAACACTGAGAGCCGCT 9395 28 100.0 32 ............................ TCATGATGGGATTGGCCGCTGGTGTACGCTTT 9455 28 100.0 32 ............................ TGAAAAGAAAGTGCTGATCGGTTCGCCAAACG 9515 28 100.0 32 ............................ GTACCACGTAAAATTGCCCGCGATAATATCCG 9575 28 100.0 32 ............................ AGATAGCCCAGAAGTCAAAGCCATGACCAAGC 9635 28 100.0 32 ............................ ACCAGGAGCATTAATACTACCGATAGTTGTTC 9695 28 96.4 32 ...........T................ TTTGGGCTAAATTCGCGTCCAGTAGGTGTTAT 9755 28 96.4 32 ...........T................ ACTTGTCTCTGCCGCCTCTAGCAAATACCTAT 9815 28 96.4 32 ...........T................ GCCAACTGTACCCACTGCGGCAATTGCACCAC 9875 28 96.4 32 ...........T................ TCGGAACTGGTGCGCATTGCGAGTAAATGTGC 9935 28 96.4 32 ...........T................ TTCACTATCTGGATCTCCTGCATGGACTAGGC 9995 28 96.4 32 ...........T................ GGCCTAATCGCTTGCAGTGAACAACGTGCTCA 10055 28 96.4 32 ...........T................ TGTTCAATCCAGAGCAAGCAGCGATAAGGTTA 10115 28 96.4 32 ...........T................ ACAAAGAAAAAACCCGGAGCGAATCCAGAAGG 10175 28 96.4 32 ...........T................ GCGATGCCGGACAGTAGCGCGAACTCTTGAAG 10235 28 96.4 32 ...........T................ TAATGCGCCGTGAGTGGTCAAATCAGACAAAA 10295 28 96.4 32 ...........T................ ATTTGGGGAAAGGTGGTTTCTGTTTGGGAAGT 10355 28 96.4 32 ...........T................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 10415 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 83 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //