Array 1 5381-6566 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODH01000080.1 Salmonella enterica subsp. enterica serovar Newport strain R8_2690_R1 NODE_28_length_56683_cov_1.55132_ID_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5381 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 5442 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 5503 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 5564 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 5625 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 5686 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 5747 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 5808 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 5869 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 5930 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 5991 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 6052 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 6113 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 6174 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 6235 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 6296 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 6357 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 6418 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 6479 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6539 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23236-24851 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODH01000080.1 Salmonella enterica subsp. enterica serovar Newport strain R8_2690_R1 NODE_28_length_56683_cov_1.55132_ID_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23236 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 23297 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 23358 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 23419 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 23480 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 23541 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 23602 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 23663 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 23724 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 23785 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 23846 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 23907 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 23968 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 24029 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 24090 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 24151 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 24212 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 24273 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 24334 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 24395 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 24456 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 24517 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 24578 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 24639 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 24700 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 24761 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 24822 29 100.0 0 ............................. | A [24849] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //