Array 1 3570475-3562886 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483452.1 Shewanella benthica strain DB21MT-2 chromosome SHEWBE, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3570474 28 100.0 32 ............................ ACATATTACCACTAAACGTAGCAATTACCACA 3570414 28 100.0 32 ............................ TTTACTGGTCAAGATGCCAGAGGGCCGACCAC 3570354 28 100.0 32 ............................ AAGAGCAGCGAACCGCTGCAGTTGCCCGATGA 3570294 28 100.0 32 ............................ ATTAAGTTTACTTTTGCTCATTGCTGCTTTCC 3570234 28 100.0 32 ............................ TTGGCTTTGCTTCTTAACTGGCGGTTTACTTC 3570174 28 100.0 32 ............................ CAAACAAGCATCTTGCGGGCATACTCTACCTG 3570114 28 100.0 32 ............................ ACTTTAATGAAAAAGTGTATAGCTGAAAACCC 3570054 28 100.0 32 ............................ TGTAATAATGAATATCATTTCAGTAGGTTCTG 3569994 28 100.0 32 ............................ TGGATTGGGCTGACTAGGTGCCGCCCTTCTAT 3569934 28 100.0 32 ............................ ACCCGTTCAATTTCAGCATGTGACCTCCTTAC 3569874 28 100.0 32 ............................ GTGATCTGCTCGCCTCGCTTAAGCCCTAAAAA 3569814 28 96.4 32 C........................... TTCACGCTTACACGGCTGGCACAGTTGCTTAT 3569754 28 100.0 32 ............................ AAAAAAGGAAACTAAATAATGTTAGAACCTAA 3569694 28 100.0 32 ............................ TTGCTGCCGGTATCGCCATCGAATACCGCGTA 3569634 28 100.0 32 ............................ TCATCAAGATCGCCAACCCTATCGACCTTGTT 3569574 28 100.0 32 ............................ TATTGATGAAACCATGGCCAATGACTGGGTTA 3569514 28 100.0 32 ............................ AAGAGCCGCGTACCCCCAGACAAACCAATCCC 3569454 28 100.0 32 ............................ AACATGCCATAAACGATAAACAAATGTGCAGC 3569394 28 100.0 32 ............................ ATCTGCTGCAAGAAGTTGGCTCATTAGCACAT 3569334 28 100.0 32 ............................ ACTAACGCACCAGATTTATTAGATAATCGTTT 3569274 28 100.0 32 ............................ TCTGTTTTAAAGCAGTGATCCTCCCACTCAAT 3569214 28 100.0 32 ............................ AGCACGGCCATCGATAACGTCGAATCATTAAT 3569154 28 100.0 32 ............................ TGATGAAACGGTCCGTATTTATCCCGATAAAA 3569094 28 100.0 32 ............................ GCTTTCACTCTGTCAAGAGTAATGCCCAGGCT 3569034 28 100.0 32 ............................ AACAGCGCGCAGTTTGTCGCCGATCTCGATAA 3568974 28 100.0 32 ............................ TACCCAGCACACAATATGGCTACCAAGCGGCC 3568914 28 100.0 32 ............................ TGCAAACGCAATGGCGGCAAATGGTGACGATT 3568854 28 100.0 32 ............................ GTTAACACACTTTCAATTTTACTGTCCATTGT 3568794 28 100.0 32 ............................ GCTACGTCTGGACGGCTAGGAGTGGCAGGGGA 3568734 28 100.0 32 ............................ GTTAACCGTTTGGAGAATCTAAAAATGCCACA 3568674 28 100.0 32 ............................ TTGATGCTCAAAAAAATGGTGACTATATGATT 3568614 28 100.0 32 ............................ TGTAGCGTACCCCATATACTGTAATACCCTAG 3568554 28 100.0 32 ............................ TAATCAATTAAACCAGCCCCTCGGGGCTTTTC 3568494 28 100.0 32 ............................ ATAGATATGGGCAATGATGGCGCCGCGCTCAC 3568434 28 100.0 32 ............................ AACAAACTGAACAATATCAAAAGGGTTAAGAG 3568374 28 100.0 32 ............................ TACCACGGAACCGAGAACTGGCGTATTTTTAA 3568314 28 100.0 32 ............................ TTTCTGGAATCAAATACGAATCAGGAGATCTA 3568254 28 100.0 32 ............................ AGCCCAGGGGGCTAAAGGCGTTCCAGCTTCCG 3568194 28 100.0 32 ............................ ACACAAGATCGCCGCAACGGTTACGGAACTAA 3568134 28 100.0 32 ............................ CAAGAGTGCAATCGTAATAATTCCCATCGCTA 3568074 28 100.0 32 ............................ ATCAATATGAGGCGAAAAAGCCCACGCGCCAG 3568014 28 100.0 32 ............................ TACATCGAAGGCATGAACGGCAGCTTCTTTTT 3567954 28 100.0 32 ............................ TTCACAGGCTGCTGAACGGTCGCCCTGATAGT 3567894 28 100.0 32 ............................ TAATCCATTGGCGTATTCAACTAGCGCAGATA 3567834 28 100.0 32 ............................ TTAAGCATCATCTGCTCAATAGATATCGGTCT 3567774 28 100.0 32 ............................ TTTCTATCTCGACGGATTGCGAAGACATTAGG 3567714 28 100.0 32 ............................ AAGGTAGCGATGATTTGATAGCCGATAACAAT 3567654 28 100.0 32 ............................ GTTAATTATTTCATTTTCGTACACATTTATAT 3567594 28 100.0 32 ............................ TATCATGGCAAGCTGACTGGCAACCCTTTCAT 3567534 28 100.0 32 ............................ CAAACGATATGGTTCAGCACGTTGAAGCGCTG 3567474 28 100.0 32 ............................ AGCTTCAAAAGTTACATCCTCACTTGTTAGAT 3567414 28 100.0 32 ............................ TTTCTCTTCATTTTCATCTACTCCTGGGGCTT 3567354 28 100.0 32 ............................ CGTTCTGCGCCACAATTGAAATATTATCTGCT 3567294 28 100.0 32 ............................ TCTTCGTCAAATTCACCCATTGCCTGTATCTC 3567234 28 100.0 32 ............................ GTCACCGCCGCCGCCGCCTATGTCTGTCTGAA 3567174 28 100.0 32 ............................ ATAGATAAAACGCTATTAGATCTTTTCCCATA 3567114 28 100.0 32 ............................ TATAGAGCTGGAGCAAGTTTCTATCTCTATAG 3567054 28 100.0 32 ............................ GATAAAATCGACCTAAATTTTCCCCGGTAAAC 3566994 28 100.0 32 ............................ TATAGAGTATGGGATTCTTACTTGTGAATACT 3566934 28 100.0 32 ............................ ACTAATGATAATCGTGATGTTGTTATGCAGCG 3566874 28 100.0 32 ............................ GTTTCAGGGCTGGTACTATCAAAAAGAGGGAT 3566814 28 100.0 32 ............................ AAATCATCGATACTAAGATCAATGTATGGCAC 3566754 28 100.0 32 ............................ CACCTAGGATTAGACCCAACAGCAAAAGAGAA 3566694 28 100.0 32 ............................ TCGATAATAGCCGACTTTCTAGCTCCAATATT 3566634 28 100.0 32 ............................ GCTATTATCGCACCGACTTGACCGCCGAACAG 3566574 28 100.0 32 ............................ ATCACCATTTAAAGATAGGTGAAGCGGTTCAT 3566514 28 100.0 32 ............................ AAGACAATGCAGATCCGTTAGTCGCCCTAGTC 3566454 28 100.0 32 ............................ GAGCGTGAAAATTGTTTTGATACTGGAAAACT 3566394 28 100.0 32 ............................ CCTGGCGGAGGTGGCGGCGGAAGTGGCGGATT 3566334 28 100.0 32 ............................ TAATTCTGTAAACATGACAGGGCTAGCGCCAA 3566274 28 100.0 32 ............................ CATGGAAAATGAACCTGATGGGAATAGCGAGA 3566214 28 100.0 32 ............................ TTGTAAGAATACCGCTCCGACTTCATAGCGTT 3566154 28 100.0 32 ............................ ACAATTTTATAAAGAGCATCTTGAACTACATG 3566094 28 100.0 32 ............................ TTCCTCAATTTCAGCTTCATTGATTGATACAT 3566034 28 100.0 32 ............................ GACACAGTGGGCAAGGTAAAGCTGACCGTACC 3565974 28 100.0 32 ............................ ACGTAGAGAAGAACTTAGCCTCTCCAGTCGTT 3565914 28 100.0 32 ............................ ACAGGAAAGAATGGCTGACAGAAGATCAAAAA 3565854 28 100.0 32 ............................ AACAGCACCAAAGGAGTCTAAATGCAGCAGTG 3565794 28 100.0 32 ............................ ATGTAATTAAACACACAACTAGCAATAAAACC 3565734 28 100.0 32 ............................ CACACGGCTACAGGCTCACAAATAATAATGTC 3565674 28 100.0 32 ............................ GTTTAACACTTCGATTCTTTCCTCTAGCTCAC 3565614 28 100.0 32 ............................ TAGACCAAACATCGCCAGGTTTTTGACTAGAC 3565554 28 100.0 32 ............................ GCTAGCGTACTAACCAATGAAACGTGGGCCAT 3565494 28 100.0 32 ............................ CCTTGGGGTGATATCAAAACAGATGAGTAAGA 3565434 28 100.0 32 ............................ TATCTGCCAAGAATTTAACAATAGTTTATTTG 3565374 28 100.0 32 ............................ AAATAATAAAGAGCTGCTATATGATGGATATT 3565314 28 100.0 32 ............................ TCCCGTAATGAAGATGTTAGATAGAGCTTCCT 3565254 28 100.0 32 ............................ TGAGAATTGAGAATTGCCGACAACTAAGTCTT 3565194 28 100.0 32 ............................ AGTTAGCTGCGGCTTAAGCTTATTGAACTCAT 3565134 28 100.0 32 ............................ GGCGGAATGCCGCCAGTAACCAGCCCTTTTTC 3565074 28 100.0 32 ............................ AAAGATAGAAATGGAGTACTCATTACTTGCAG 3565014 28 100.0 32 ............................ GATATGGTCGAGAATTCGATCCCCCTCGTACA 3564954 28 100.0 32 ............................ GATAGAGTACGCGGGTGACACTGATGAAGTTA 3564894 28 100.0 32 ............................ AGAAGAATTTGACGCCGCCGTTAATGCTTACT 3564834 28 100.0 32 ............................ AATCAAACCGTCCAGGCCCAGGTGTTTTATAC 3564774 28 100.0 32 ............................ TTATCAATAATATTCGCGCCGCCCACAAACGG 3564714 28 100.0 32 ............................ TCGAGATAATGCGACAGGATGCCATGCGCGTC 3564654 28 100.0 32 ............................ GATTCATTTAACTCATTACCGATTCAATTTAA 3564594 28 100.0 32 ............................ GAATAGTGGTCACAGCTATCTAACAAAAAAAC 3564534 28 100.0 32 ............................ ACGTAAGTATGAACTTCAAACCCGTTATCATG 3564474 28 100.0 32 ............................ ACGGATGAAAACTTGGTAAACCTCATTATTAA 3564414 28 100.0 32 ............................ AGAATGATTACGCTGACAGAACAACGAGTATT 3564354 28 100.0 32 ............................ AGTTCTGCCGGAAGTCATACACGCCATCTAGA 3564294 28 100.0 32 ............................ CGTTAATATATAATTGGGAGTGTGAAGAAAAG 3564234 28 100.0 32 ............................ GCTAAGAACTGCCTAGACTGTATAATCTCATC 3564174 28 100.0 32 ............................ TGTTAAGCATGGTTCATTTTTTGAAGGTAAGC 3564114 28 100.0 32 ............................ TTGAACCTGCCAATTAAAATAACGTGGCTAAA 3564054 28 100.0 32 ............................ TCATTTGAAGAGCCTGCAGCAGTGTTAAATCC 3563994 28 100.0 32 ............................ ATTAATGAAGCACAAAGAGATCACGTTGACGA 3563934 28 100.0 32 ............................ TTTGGCTTTATCCGAGGCATACGAATCAAACC 3563874 28 100.0 32 ............................ TAGCCAGCATTTCGTTTTAAAACCTAAAAGCC 3563814 28 100.0 32 ............................ TGTAACCTTGCTTGCATTGGGTATACATGATT 3563754 28 100.0 33 ............................ TGATGAGAGCATGGTGGTCGTTAACCAATATGG 3563693 28 100.0 32 ............................ AGATGGCAAAGCTTGCCCCCGGTTTCTGTTAT 3563633 28 100.0 32 ............................ ATACTCGATTCCAGTTAACCGCCGTTGCAAGC 3563573 28 100.0 32 ............................ GTCACGCCTATGCGAGTCTGGTTTTTTATTTT 3563513 28 100.0 32 ............................ GCAGCAGCTCCCCAGGCGTCCATCAGTACAAC 3563453 28 100.0 32 ............................ ATCAATGAATTCCACTGAACCTCGAATGGTGT 3563393 28 100.0 32 ............................ TCTAGCATCTGCTAGTTCACTTGCTTTAATCA 3563333 28 100.0 32 ............................ AGCTTTATAAACACTTAAAGGGGAAATCTAAT 3563273 28 100.0 32 ............................ GACCACGCGCCCACACGCTAGCCTGTCTGGTA 3563213 28 100.0 32 ............................ TCTACATCAATGGAACCACCGCGATAAACGTT 3563153 28 100.0 32 ............................ CTACAAAGACGTTAGAGCCTGGGCCATAAGGG 3563093 28 100.0 32 ............................ TTTCCCGATAACAGGCCAATAATTGTCTTCCG 3563033 28 100.0 32 ............................ ATCGAGCTACTTGGCCAGCGAATTAACGAATT 3562973 28 100.0 32 ............................ TTGCTGCTGGGTCTGTTGCTGTTGTGTACTCT 3562913 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 127 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTACTTCATGACTTACAAGGCTTATGCTGGTTAGGTGCCTTAAGTGGTTATTGCCGAACCGGAGATGTTTTGAAGGTGCCGGAGGCAGTTAAATACCGCATTATTTCAGTAAAAAGGAGCAATTTGAGCAAGTCAAAAATGAACCGCTTAATCGCCAGAGGAAGCATAGATAAAGACGGTGAAAAGCGTTACAAGGTAAAAATGTTAAGTCAAGGTTTTGATAATCCTTATTTAGACTTATTCAGCAGTTCAACAGGACAGGTACATCGTAAATTCTTTGAGTTTAGTGATATCAAAGAAAAACCAATGGTGGGTATTTTTGATACTTATGGTCTAAGCAAAACAGCCACAGTACCTTGTTTTTAACCCTTTATTTTCGCTCTTTAAAAATTTAAATGTAAAACAATAGGTTACAATAAGTCACTTTTTAGAAGGTTAAATAGGTATTTTTAGCCTAAAGACTTGTTGTAACTTATTTTTATGCTGATATTCTATT # Right flank : TCTCTGGGGGAGACCTGGAAAGAGAAGGGCGGAGAGATAAAGGGGTCAGAGCGAATTAGGGCCTTCGGATAAACTAAGATACTTTTTCTAATTAATGTCAGGTTAACCAGGCCCAATGCTCTAACCCATTTCTGTCCGTGCGACGTGAAGCTGTATGAAGCGCTGTTCACCGTGATAAGAGTGAACCATCTGTATCACCAGATGACTCTAGGACTCTGAATAAAGAAGCGAGTCTGACAATGTAACGAAGTCGATTGGACGGGAGCAGAATCGTGAGAGGACGTTCTTCCTGATAACCACAAGTCGGGTAAGTGCTAGGGAGTCAGTATGATGAACATATGTGAATCCACGTAAGGTGCGTTATACGGCAAGCAGCGGAAGTGGTTTATACGCTGTGGCCAAAATGGCAACGAGAGTAGGAAAGAAGCTGGGCATTTTTCTTTCGTGATCAACATTACTCTCCGCACTAGAGTGGGCATCTAAACTGACATTACGCTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //