Array 1 4371992-4373212 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LN808749.1 Xanthomonas citri pv. citri strain JM35-2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	===============================	=====================================	==================
   4371992	    31	 100.0	    37	...............................	AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAG	
   4372060	    31	 100.0	    35	...............................	CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG  	
   4372126	    31	 100.0	    34	...............................	CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCG   	
   4372191	    31	 100.0	    35	...............................	CGCTGCACGGATGCGCCAGGCGGCGAGGCGATCAT  	
   4372257	    31	 100.0	    36	...............................	GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC 	
   4372324	    31	 100.0	    34	...............................	CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC   	
   4372389	    31	 100.0	    36	...............................	GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT 	
   4372456	    31	 100.0	    37	...............................	GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC	
   4372524	    31	 100.0	    36	...............................	ACGTCTTGGACCTGGGTGTGGTTGCTGAGATAGTCA 	
   4372591	    31	 100.0	    35	...............................	GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA  	
   4372657	    31	 100.0	    35	...............................	GCGGATATGTGATTAGACCCTTTTACGACTTTCAG  	
   4372723	    31	 100.0	    35	...............................	ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC  	
   4372789	    31	 100.0	    34	...............................	TTGACCACATGTTCTCTCTGTGGGAGGAAGGCAC   	
   4372854	    31	 100.0	    34	...............................	TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA   	
   4372919	    31	 100.0	    35	...............................	TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC  	
   4372985	    31	 100.0	    34	...............................	CTGACTATCCCTGCATAGGCCACGACCTGCGAGG   	
   4373050	    31	 100.0	    34	...............................	CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT   	
   4373115	    31	  93.5	    36	T...........T..................	CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 	
   4373182	    31	  96.8	     0	.G.............................	|                                    	
==========	======	======	======	===============================	=====================================	==================
        19	    31	  99.5	    35	GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	                                     	       

# Left flank :   TGACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAAAAAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGGG
# Right flank :  CAATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTGCAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCGTGCCTGCAGGCTTGCCGTCCACCATGACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCAGCCACCTGGCCATCCTGGTAGGTCAGCTTTGCCGACACGGCCACGTTGCTCGCGCTGCCGTCCGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTCGCCGGGGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACACTGGACACCGTCACTGCGCTACCCGTGGCAGCACCGCCATCGGTGCTGGCCGCACCGGT

# Questionable array : NO	 Score: 9.23
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCGCCCTCACGGGCGCGTGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.20,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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