Array 1 406176-406387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATEK010000002.1 Microbispora sp. CL1-1 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 406176 29 100.0 32 ............................. GGCCGCGGACATGGCTCAACGGGTGGACGAGC 406237 29 100.0 32 ............................. CGGTCCGGGCGGGCGTCGCTCACTGCCACGAC 406298 29 93.1 32 .....................C......G CGCACGTCGGCGTTCTTCGCCATGGCGTGAGA 406359 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTCGGCCCCGCGCCCGCGGGGATGAACAC # Left flank : CGACGATCACGGTGGACACGCGTACGCGTGATCCCGGCGACCACCGTCGTGACCGCCCGCACGCTGGTCGCGCTTCCACGGACGGCGCACGCGGCGGTCACGGGGCCACCGCCGCAGGCGCCCGCGCACCTGTCGGCCGGCGGAGCGGCCTTTCACCGTCACCCGGACGGTCGCCAGGCAGGAGGGGCTGCGGCAGAACGGGACGGCTGAGCCGTTCGGCCTCATGTCCATGGCGCCGGCCGACGCGTCGATCGTCGTCCGAGGGGCGAAGCTCGATTCGCCGATCGACCCGTGGCGGCCGCGGAGCGCCAACAGGCCGCATGTCTGGTGCACCCACGCGCCGGGCCGTCGCCCGGGCGGCACCATCGAGCCCGGCAGCGTCGGCTACCGGCACTACCACGACCATGTCGTCGGCACCGGCCACGGCACTGGCGGCAGCAAGCCGTACGTGACCAAGCGCGGCCGGGGACAACGACAGAGCAAGCCGCAGCTCAGCAAGT # Right flank : TGTCCGACGAGGACATCAAGGATCCTGCTCATGCTCCTGGGCCGCCTCCAGCTCTCCGGACTGCGCGCTTACTCGGGGGGCTGCCTCGCGTCATAGATCTTTGTTAGTGTTTCGCCCGGATCGACGCCGAAGCGTGGCTTGGGAGGATCGTCGTGTCAGGGCCGTTCAGCGCGCCTCCCCAGCCGGACGGTCTCGCCTCCGCCGCCGAATTCGTCGCCGCGCTGCGCCGTCTCCGCCAGTGGTCCGGTCTGACCTACCGGCAGCTCACGGCCGCAGCCAAGGCGTCGGGAGACGTGCTGCCCAGCAGCACGATCGCGGGGGCCCTCGGACGCACGACCCTCCCCAGGGAGGAGTTCGTGGCTGCCTTCGTACGGGCCTGCGGGCTCGGTGAGGCCGAGACGGCGCGCTGGGTGGCGCACAGGAAACGGCTGGCCGCAGGCATGGTGCCCCCGGCCGATCCGCACGACACGGCCGTAGGCCGGAACCGCCCGACCGGACCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 235-1300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATEK010000035.1 Microbispora sp. CL1-1 35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 235 29 100.0 32 ............................. TACACCATCCAGATCAACGGCGTCCAGGTGGG 296 29 100.0 32 ............................. TACGACCGCACGGTGACGCTGGGGTCCGGCAC 357 29 96.6 32 ............................G CGGCGCCCGGCCGAGCGCGACAGGTCAGATCG 418 29 100.0 32 ............................. GCCTACGTCTGCCCCGGCTGCGCCTCCGGCCT 479 29 100.0 32 ............................. CACTGCAGGACCGCGGTGGAGTAGATGTCGCA 540 29 96.6 32 ............................G GTCTGGGGCGGCCTGCCGAAGGACGCCCAGGT 601 29 96.6 32 ............................G CCCTGCACGTCCTTTGCCCGGGTCAGCAGCCA 662 29 100.0 33 ............................. CGGGCAGGGGCGGACATACCGGGGGGGCATTGT 724 29 100.0 32 ............................. TGTGATGGGTGCGCGGAGGTGCTTGGCGCAGG 785 29 100.0 32 ............................. GGCACCATCACCGCCGCGTACAAGCGGGCGGA 846 28 93.1 32 ....................-.......G GTATTCGAGGGCCTGACCCCTGGAAGTACCAC 906 29 96.6 32 ............................G GTATTCGAGGGCCTGACCCCTGGAAGTACCAC 967 29 96.6 32 ............................T CCGACCATCTCAGTGAACATTCCGCTGTCGGT 1028 29 96.6 32 ............................G AAGCTCGTGCTGTACCCGGTCGACGCGATGGT 1089 29 100.0 32 ............................. AGCTACTCCACCTTGTGGAGCGTCGACAACGG 1150 29 96.6 32 ............................T CCGGGTGCCTGTCCCTGGCCGACCCTCGTGCG 1211 29 96.6 32 ............................G CCGTACGTGACCAAGGCGCTGGTCGACGAGGC 1272 29 89.7 0 .............A............T.T | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.5 32 GTCGGCCCCGCGCCCGCGGGGATGCTCCC # Left flank : CTTTCCCCATAAAACACCCAATTGCCGTGCTGCATCCGGATCCACGGACCCCAGGTCATACTCGTCCAAGGACCTCCTCCTTCAGGTCGGTCGCAGGCCGGTCAGAACACTAGAAGCCGCCACCGACAGAAGCAGGCGATTGTCATATAGGGTCGCCCGTGGCGATCCGAACAGCACTAAATCGAACTGAATGAGAAACGACACCCAGAGCCGAAAAGCCGCAGCTCAGCAAGTG # Right flank : TCCTTGGTGGCCTGCTCGGTCAGCGGACCACAGGTCGGCCCCGCGCCCGGCCGCGCCCGTGACCGTGGTCGTGAACAGGCTTGTTGTGGGCGGCGTCGGCCGAGGCGATCCCGGGCAGTGCGGCCATCACGCCGCCGAGCACCGCGACGATCGCGGCCCTGCGCAATGCACCCATGTGTCATCCCCCTGCGAGTAGTGCTGCTGTGCGTACGGCCGGGCACGACGGGCCCGACCGTGCACAACGATCAAGGGGCAGCACGAAATCAATCAGGACGAAGGTTGTATGAGCGTCATAAGTGAACGTTTCGCCCCTGTCAGGGGGTGACAACGCACTTGACGAAGCCGTCCGGGCGGTCGAGGAAGTATCCGAACCCCGTGTCGAGGTCCTCCAGTGAGACGGTGTGGGTGATCAGCGGCTCGAAGGTCAGGCGCCGGTCCGCCATCATGCGCAGCCCCTCGGCCATGGCGGCCATGAGGCGCCACCGCTGCCCGGTGAAGCC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43525-42826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATEK010000049.1 Microbispora sp. CL1-1 49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43524 29 96.6 32 ............................C ACGATCGTGCCGTACGCGCTCCGGTCGGCGAA 43463 29 100.0 32 ............................. TATCCATACTGCCGGGCTCCGGTCGCGCCACA 43402 29 96.6 32 ............................C CCGGCGTGGATCTCGGCGGCGCTGCCGGTTTC 43341 29 96.6 32 ............................C ACCAGGTGCCGCAGGAACGGGGTTGCGCATCG 43280 29 100.0 32 ............................. TCGTCTAGCCAGATGTTGACGGCGCTCTGCTC 43219 29 96.6 32 ............................C GTCCCGACCCGCACGCCCGAGCAGGTGCGTAA 43158 29 96.6 32 ..........A.................. AGCTCGCCGGGCGGCTGCACGCCCTGCTGAAA 43097 29 96.6 32 ............................T GAGTGCCAGTGCGAGCCGTGGGAGCGGCGCGA 43036 28 93.1 32 ....-.......................C CCTCGCCTGTATGTCGCGCGCCGAGTATGGTG 42976 29 100.0 32 ............................. GCGAACGGGCAGCTCGGCGTGTCCGACAAGCA 42915 29 100.0 32 ............................. AGCATGGCCGAGGCGTGGGACACGTACACCAC 42854 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 GTCGCCCCCGCGCCCGCGGGGATGGTCCG # Left flank : GACGACCTGAACCAGCTCTGGGACGAACGGCTCGGCACCGTCGCGGGCGGCATCAACTGGGCCGACGAGTCCGACCTGGCCATCAACCTCGGCCTCAACCTTGTCCAGCCGAGTATGGGTGAAGACCACATCGCCGTCATCGGCCCCGAATTCGACACCCCCGGCCTCACGCCATGACCGTTGTCGTCCTCATCGCCGCTCCCGAAGGTCTCCGCGGCCATCTCACACGATGGATGGTCGAGGTCAACGCCGGAGTCTTTGTCGGCAACCCGAGCCGCCGTATCCGCGACCGCCTATGGCATCTGCTTGCCACCCGAATCGGAGACGGCCAGGCCATCCTGGTCGAACCCGCCAACAACGAACAAGGATGGACCGTCCGCACCGCAGGCAAAGATCGCTGGCACCCCACCGACTTCGACGGCCTCATCCTGTCGGCCCGCCGCCGAACCCAACCGAATGAAAACCGCCCCCAGGCCAGATAAACGTGCAGCTCAGCAAGT # Right flank : CGGATCACGATCCGGAAGCCGGAGTCGTGGAGGCGCGCCAGGATGGCGGCGAGACGGAGCCGTCTACCTACGGAACAGACCCGAGCCGCGGCGGGTCGGCCAGGTGCGCGGCGACGGCGGCGGTGAGGGAGTCGTCCTCGGCGAGGTCGTCGGCGCCGATGACCGACAGCAGGGCTCGTACGGCGTCGGCGCCCCGCCGGTCGGCCCACGCCTGGCTCAGCCGCGCCGCGGCGGGGTCGTCGGGCTCGCCGTCACGGGTGTGCCTGGCCCACGCGGCCAGCGCGAGCTCCAGCATCGGCGTCTGCGCGCCCGCCGCGCGTAGCTCGCGCAGCGGGGCCAGCCAGCGCTCGGGCACCTTGAGCGAGCCGTCGGCGGCGATCTGGCGCAGCCTGTGCCGCATGGCGTGGTTGGCGAAGCGCTCGATCAGGGCGTCGGTGTACGCCTCGGAGGAAAGGCCGCCGGTCAGCGTCGCCGCCACCTCGGCCGTGTAGGCGCGTACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCCCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6812-5134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATEK010000073.1 Microbispora sp. CL1-1 73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================== ================== 6811 29 82.8 32 .CGT..........T..........T... GAGCCGGAGACCGAGACCAACGGCGGGCAGGA 6750 28 93.1 32 ..........T..........-....... TACGAGGCCGGGTTCCCCCTGTCCTGGGAAGC 6690 28 93.1 32 ........-...................A AAGTGCAGGACGAGGTAGGCGACGACGGCCGC 6630 29 89.7 32 .............G..CC........... GTGCGACGCGCGTACGCGCGACGCGCGAGTGT T [6612] 6568 28 96.6 32 ........-.................... AAGACGGAGCTGGGCGTCCAGCCGGGCTTAAC 6508 29 86.2 32 ...........AA.TA............. TGGCTGGGCGAGGACCTCTTCAAGCGGGCCGA 6447 29 75.9 21 ...GGT.......GG...A.C........ CGGAGCACGAGGCGCGGAACC A [6426] Deletion [6398] 6396 29 82.8 30 ..T........A..............AGA GCCGACCGAGGACGACAGCGATTTCGAGGG 6337 29 79.3 31 T...AT.........C...A...A..... CAGGTGGGCAGGATCCCGCTGCCGCAATGTT 6277 27 93.1 31 .............-...........-... ATGTTCCAGTTCCGGGTCGAGGACATCACCC 6219 29 89.7 82 .............TT...........T.. TAAGAGGCCGAGCTGGTCCTGAAGAATCGTCGTCCGTCGCGGTCAGCCGACGCTCCGGGGAGCCGAGTGAGGCGCTGCGGAA G [6197] 6107 29 82.8 32 .G.A...T..........A.........A CCGTAGGCGGGCACCTCGTACGGGCCGAACTG 6046 28 93.1 32 ...A....-.................... GACGGTGGTAAGGAAACATGGGCTTGCTATGA 5986 29 100.0 32 ............................. CAGGCACGGCACGACCGGCTGATGGAGCTGCC 5925 28 82.8 32 ........-....C...C...C......A GGGACGCCCTACCGCGACGAGGTGACGCGGCT 5865 29 93.1 32 .....G...G................... GACGAGACCGGTCGCGGCCACTTCAAGGTGGA 5804 29 89.7 32 ....G.......T.T.............. GTGCCGACGTACGGAATCTCGACGCGGGGCAC 5743 28 89.7 32 .......T.....G.......-....... GTCGGCCCGGCGATGCGCCGCAGCCTCGACAC 5683 29 96.6 32 .C........................... GTGATTCTCACCTCCACGGGGCGCATCAGGGT 5622 29 96.6 32 ............................C TGGAGTCAGACCCTAATGTGGCGCCATGCCAC 5561 29 100.0 32 ............................. CGTGTGGCCGAGTACCAGCGCCACCTCCAGGC 5500 29 96.6 190 ..........................T.. TCGTTCGGCGCGCTGGTCGCGCTGGGCAGACTGCCTGAGCGTTGATCTTGTGACTGGCTGACACCGTCACGATCACCGTTCAGGGGCACACCCCTCCCCACGACACGCGAACACGCACGAAGACGAGTGGGGACTTAAAATTGGCCACCGGCGGTGACCTCAACCCGGCCACCTGCGGCTACTTTTACAA 5281 29 86.2 85 .G..A.........GT............. AGGCCGACATTCACCGCCTGGGCGCCGAGTTCGTCCTCTCCACGCACGTGCCCGCTCCACCTACCTCGCCAGCAGCCTGCCGGGC ACAGG [5271] 5162 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================== ================== 24 29 90.3 43 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : CTTCGCGTTCCGCCTGGTCGCCAACCCCACAAGAGCCGTCAAGCGCGACGAGAAACAGCAGAGCGCGCGAGCTGAGCAAGGCAAGCGGGATCAACCGCGCCGCGTCGTTCACCGCACCCCCGAGGCTCAAATCGACTGGATGATCCGCCAGGGGGAACGCAACGGGTTCGTCGTCCCAGCGGGCAGAAACGGCCGACCCGACGTCGCACCCTCCCCGGCGTTCCGCATGCAGGGGAAGACCTACTTCGGCGATGAGGCGCAGAAAGTTACCATCGATCACGTCCGGTACGACGGTCATCTGATTGTCACAGACCCAGGTCTGTTCGCGTCGGCTGTCCGAGACGGCGTCGGCCGGGGCAAGGCTTACGGCTGCGGCCTAATCAGTCTCGCCGCAGCGCGGTGATCAGCAAGTCGCAGATTGACAACTGAAGAGCCCATGGGGCAGCTCTCCCAGCTCTGGGGTGACCCACAGGAAATCGTGTGCATTGACTGCCTTTAGG # Right flank : GTGTACGACCGTTACAGGTCAATATCCAGGATCCTCCCCGCACGTGGGGTGATCGAAGCGTCCAGACTTCGAGTTGCCCACTGATCATGTTTTCGGGCGAAGAGAATATGGAGGCCGGTGTGCCGAGGAGGTCGGACGGGCGACTGCTGGTTCGGCATATGGCTTGGCGTGCCCAGGCTGGGCATCGAGGCCAGCCACGTCGACCGGGTTAAAGCTTTGGGTCACCCGTCCTGACTGCAAGCGTGCCTGCTCGACGGCGTTCACGACAGCATCGTTGACCGTCGTAGCCTCCAGCCCCAATCGCGTGGCCGTACGGACGACCTGGCGGGCGACCTGTCCCGACGGCAGGCCCGCGACGATCGGGGCGACGGCCTGCAGGGCACGCATCCGGTCTTCGGCAAACTGCAAGCGCGGGAATCGCGCGAGCGCGGCGTCGACCACGATGTCGGCAAGCGGCACCCGGCTGCGGTCCAGCAGCCGGTGCAGTGCGGCGGGGCCGT # Questionable array : NO Score: 3.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:-0.99, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [17-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1656-3692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATEK010000068.1 Microbispora sp. CL1-1 68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1656 28 79.3 32 TGTG.........T.........-..... GGCGACCCCAACGAGATCTTCACCCCGTTCTC 1716 29 100.0 32 ............................. CCTCCACGGCTGTGGAGACGCTTCTGGGCGCC 1777 29 100.0 32 ............................. GCCTTGGCGGGGAGCTTGTGGACGTTGGGCAT 1838 29 100.0 32 ............................. CCTTCTACTCCGTTGCCCAGCTCCGCATTCTG 1899 29 96.6 32 .................A........... CCCCGCGGCCGGGACAGCACGCGCGTCGCCGC 1960 29 96.6 32 ........T.................... GAAGCCAGCCCCGCGTCCGACCCGCTGCGCAC 2021 29 100.0 32 ............................. CTGGGGCTGTATGGGGTTGTAGAGGTCCGTCG 2082 29 100.0 32 ............................. CAGGCGATGGCGTACTCGTCCTCAAGGGCGGC 2143 29 100.0 32 ............................. GACCCGAGCGTGCGTATCCTGATCTGCTCCGA 2204 29 100.0 32 ............................. TTCCCGCTGTACTTGCATGACCAGCAGATGAA 2265 29 96.6 32 ...........A................. TCCGGATGGGTCGAGTCTCTTTTTCAATACGT 2326 29 100.0 32 ............................. CTGTCCCCGGCGGAGCGGGAGGGCCTGTACCT 2387 29 100.0 32 ............................. TACCGCGCCTGGGAGGACGAGGGCTGGGACAG 2448 29 96.6 32 .............G............... TGGTCCCACGGGAAGCCGGTCCCGGGGTCGGT 2509 29 96.6 32 .......................A..... GTGGCGACCAGGGCGACCCACACGGTGGCCAC 2570 29 93.1 31 ..........A...G.............. TCTCCGCCGAGTGACTCAGCACCGGATACTA 2630 29 100.0 32 ............................. GACCTGGGCCGGGCCCGGGTCAAGGAACTTCT 2691 29 96.6 32 ....................A........ ATGTCGGGATACCGCTTGATGTTCTCGATATC 2752 29 100.0 32 ............................. TCCTGGCGGTCGAGCCTGCCGGTGATCCCGAC 2813 29 96.6 32 ..............T.............. TGGCCGGTCCCGCAGGTGGGGTCGACGGTGCG 2874 29 100.0 32 ............................. GCGAAACCGTGGTCGATCTACAGGGGGGACGC 2935 29 96.6 32 ...................A......... TCCTGGCGGTCGAGCCTGCCGATGATCCCGAC 2996 29 96.6 32 ...........C................. GACGTCTGGGCCGCTCGCGAGGGCATCCTGGA 3057 29 96.6 32 ......................C...... CCCCGACGCCTCACGCGTCGGGGCCTGCTGTC 3118 29 100.0 32 ............................. AAGGAGTACGAGGACTGGCAGCGGTCCCTCGA 3179 28 89.7 32 ..................A..-C...... TCTTACTCTTCATCGTCGGCCCAATCCGGGAA 3239 29 100.0 31 ............................. CTGGGGCACCCGCAGGGGTGGCTTTGGGGCC 3299 29 96.6 32 ...........................T. TTCAAGGTCGGCGACCGTGTCTGGGTACGGTT 3360 29 100.0 32 ............................. TCCGGGCCGTCGCACAGATAGACGCGCTGGAA 3421 29 96.6 32 ...................A......... GTCGCGGAGATCGACGCCCAGTACCCGCTCCC 3482 28 93.1 32 ......G..........-........... ACCGCCGAATGGGCCGGCATCGCCGCGCAGAA 3542 29 96.6 32 ........G.................... ACCGTGCGGTGGAACGCCACGCCGACCTCCGT 3603 29 100.0 32 ............................. GTCTGACGTGGCGATCTCTGGCAGCTTCGAAG 3664 29 96.6 0 .......................C..... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 97.3 32 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : ACGTGTCGTCGACATCGCAGGGAGCGGCAGACCGATAACCACAGCTGATGGCGGCGGCGATCCGAACCCCAGCAGTGATGACGGGACGGCGGCCGGAGGTGGTCGGGGCGGACAGGACCCGGGATCGGAACTGGCTTGGGGTATTCCGGCCCGGGTAACGTCACCTCGCATCACAGTCTCAATCAGGCCCAGCCGACGCCAAGCCTATGGGTTAACACTGTAGACGTCGGGATTGACATGTCACGTGGGCCGCCGATCGGTGTCGGTGAGATGGGTACGAGGCGAGGCGCAGTTGCGGACCTGATCAGGATCAATGACGTAGTACGATCCGAGCCCTTCGCAGTCGAATGGACCGCAATGAAGGCTTGCTTGAGAACAGAATCATCGTCATCCGGGCTATCCGGATGAGCACGAGACCCAAGCTTGCGATCGCATCGGCACCGCTAGGCCTGCTTCCAGGATGCGAGTGCGTTTGTAGAAACAGCAGGTCGCGAAGTGTG # Right flank : GCGGGCATCACCGCGCATTGGTAACGCTCTCGAGTCCACGTGAGGTGAGCCGTCTTCCCTTCATGGAGCAGGCGGATTGGCTGTGGGCAAAGAAGCTTCGTGGCGCATGGGATGGACCGGGGAAGTTGAGATGGGTGCGGGGTCGTCGACGGCGGACTTCACCACCTGGTCGATCGTGTTTGGGTGGTCGAGGGCGGCCAGAGCTGCCGCCGTACTGGTCCGGGTGGCTAGCGCAACGTTGACAGCTTGCAGTGGCAGGTTCGTACGGCTCTCCAGGACCAGCCGCAGTTCCTCGTCCGTGGGTGCAGCGGCGCCGGGGCAGGCGCCCAACTCGTCCAAGAGTCCGTGCGCGCGCTGCTCAGCGGCGCGTTCCCAGTCCTCACGGAAGGGGCCGTGCTCGAAGTTGTCGAACACCGCCTCGTGGCCCACGCCGACGGTGACCGCCGCGCGACGCGGGGCGGGGCCACGGGCGTCTCGGGAGAACGACGGGGTGGCCTGAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //