Array 1 52156-50547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLSJ010000004.1 Sphingomonas paucimobilis strain 13935_NBRC Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================== ================== 52155 28 100.0 33 ............................ TGACAAACACTCCAATGGATAAAAATTTTCATT 52094 28 100.0 32 ............................ TGAAAAAACTACTCAAAAAAATGAGTAAGGCT 52034 28 100.0 32 ............................ TGCGAAAAAGTTAAATAACGACAATCCATTTA 51974 28 100.0 32 ............................ AGACAGACCCACAATGAATAACATTATTCAGG 51914 28 100.0 32 ............................ ACATAGACAATTAAGTGCGGAGTCGTTTCATC 51854 28 100.0 32 ............................ TTTCTCCGGGTTTTTCGGATTAAAGCGTTTGA 51794 28 100.0 32 ............................ TGGCCATGAAATCAGAACTTTCAAAGCTCGAT 51734 28 96.4 32 ...........................G CGCTCATGGGTATCTGCTGCTTTCCAGAAGTC 51674 28 100.0 32 ............................ AGACAGACTGCTTATGAAGAACTAAACCGCTT 51614 28 100.0 32 ............................ CTACAGGATGCAATCAGCATCACCCAGCAGGC 51554 28 100.0 32 ............................ CTCACGTTATTTTTGATGTTGTAACGACACTT 51494 28 100.0 31 ............................ GGACGTTGCACTTCAAAAATATAAAGAAAAT 51435 28 100.0 32 ............................ AAAATCAGAAGTGAAAAATCGATTTTTGATAC 51375 28 100.0 32 ............................ TAAAGAACCTGTTTGGAAAGCACTAAGAGTCA 51315 28 100.0 32 ............................ TAAAGAACCTGTTTGGAAAGCACTAAGAGTCA 51255 28 100.0 32 ............................ AAAATCAGAAGTGAAAAATCGATTGTTGATAC 51195 28 96.4 32 ............G............... AAAATCAGAAGTGAAAAATCGATTGTTGATAC 51135 28 96.4 32 ............G............... AAAATCAGAAGTGAAAAATCGATTGTTGATAC 51075 28 96.4 32 ............G............... TAAAGACCCTGTTTGGAAAGCACTCAGAGTCA 51015 28 92.9 32 ........G..........C........ TAAAGAACCTGTTTGGAGAGCACTAAGAGTCA 50955 28 100.0 32 ............................ TGATAGGTTCTGCACCCCGTTTTTGGGATCAT 50895 28 100.0 32 ............................ ACAACATCAAACTGTAGGCCGACACAACTCAG 50835 28 100.0 53 ............................ AAGTGAGGGTGGCAAAGTTGAAGAGGGTTTCAGTTCCATAATATAAAGAAAAT 50754 28 100.0 32 ............................ GAACTGGCATATGAATTACAGCAACTCGGTTT 50694 28 100.0 32 ............................ ATAATATTCTTAAAGAATCGACGTGTTTCTGG 50634 28 100.0 32 ............................ TCTCTACGCTCATTTTCAAGCCTTTCCTGCTC 50574 28 85.7 0 ........................TCTT | ========== ====== ====== ====== ============================ ===================================================== ================== 27 28 98.7 33 GTTCCATATTGCATACGCAATTTAGAGA # Left flank : AGAAGGTAAGCGCTATGACTTGTATCAAGGTGAATTTGCCCGGTCAACAATTCAAGTGGTACTTAGTGACAAATCTCCACCCCCATTAATTAAAGTGGAAAAAACCACACAGGGCGCAGAGTACCTTACTTGTAACGCTTTGGAGTTGTTTAAAGACTCTATGGATGCATATAATTGCGATTCTGAGCACCTTGATTCATATGTGCAGTTGGATGTGTCTCGTTTTGAACATAAGACCATTGAGATGGACTATATCGAATTGCAAGTAGTCAATCATGGGGGCGATTTGTTTGCATTTATGGGTAATGATCCCGCCAACTAATTGTATTCAACTTTACAGCCGCGCTAACAGCGCGGTTTTTAAGAACACCTAAGTTTTATTTGCCGCCAAATATCTATTTATTAATCAACAACCTATATAAGTGGGATTTTTCTTTGGTTTTATCGCTAAAAACTTGGCAAAATATTGAATTTAATTGAAATATGGTTTTAAATTCATA # Right flank : AACCCGTGTTCAAACATGGGTTTTTTTTATTTATTGGATTTCGATCTCGCCTATATGCTAGTAATCGCCGTATAGTAGGTGGGAAGTAATACCAACAATTGAGTTTCGAGCATGAAGAAGATTTATCGCGACCCGAAAGACAAAAACAGCGTTCTTGAAATCCCTGAGCATTATGACGCTGAAAAGTTACAAGAGCTTTTCTCGAATATAAAGAAACCAAAAGACTTTGCGCAAAGGATGGATAACATGATCTTCATAGCCAAGTACTTCAATTATTCTGAGGATGAGATCTTTTTAATCACCAACCTTTCTGCAGCTTTTCTTAATGCTGAGAAGTTGTCGAATCCCAGTGTTCAAGATTCAATTTCAGATGCGATTGAACAGTTGGAGCGGGGATTGATGATTACTATTGGAAGAGAGATTGGCTGCAAGTTGGCTGATGAAATTTTTATATTATTAAATATGCATGAGTCATTTCCCTAAATTTCGATCAATTAATT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCATATTGCATACGCAATTTAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 55895-55625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLSJ010000004.1 Sphingomonas paucimobilis strain 13935_NBRC Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55894 29 100.0 31 ............................. CGAAGCAACACTACATGAAGGCTCAAAAGTG 55834 29 100.0 32 ............................. TAAAACTTGAGATTGGATTTCTTTGATTTATA 55773 29 96.6 31 ............................G AAGATTGACGCAGAAGAGCACTTTTTAGATT 55713 29 100.0 31 ............................. AGCGACAGCATGCAGTAACTTACGATATGTC 55653 29 86.2 0 .......................TA.TT. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTTCCATATTGCATACGCAATTTAGAGAT # Left flank : TCCGCACATCACGCAATTCCCTGGCATGATGCAAGCCTTATACTCAGTCGCCTTTTTGGCTAATTTTGTGTTTAACGTGCGCGAAGGTGTGTACGAAGACTTGAAACAGGTGGTCTTGGAATGCGCATTTATCACGGTTGAGAACTTAATTAGTGCGGCCAATGCGGTTAATTTGGATATTAATAGCGATATCCCCGCATTGGGTGCCAAGCAAGCTCAAGAGCTGATATCACAACCAATTATCTATGTGCAAAGCAACTACTCCACAATTTATAGTGAGTTTGGCTTACATATGGCTGATACGGTGGCAGCAGAGCATGCACGTTGTTTTTTGTATTTTCTTAACTTCAAGGACATTCCTTAAAAGCACCCAAAGTTAAATTTAAGTCAAATATTTAGCTAATAAACAGCCGCTTACATAATTGATATTTGTTTTTGGTATCATCGTCACATGTTTAGTAAAATGTTGATTTAACTTCGAAATTGGGTTTGAATGCATT # Right flank : CAGCCCATGTTTGAACATGGGTTTTTTATTGCCTATAGGATTTCGACCTCGCCTACCAGTCTCCGGATCAGCGCATACGACTTTTAAGAGCAAAGGCATAAACCTTTCAGAGAAAGGATCTCGAAAATCTCGCCGTGTATAACTCAAATAATCTACATTATATAATATACATTAAAGAATAAATGCGTTATAATTAACTTATACAAACAAAGGGCAAGATAGCCCATTCGGAGACCGCCATGAATGCAATTGAAATCAATGTAGGTTCAGTTTTGCAAACCCTACTAGCAAATGCCCTTGCTGCCCTGCTTGGAAATTACACCTTCTCACAAAAAAATGCTCTTGAGCAGGTTGATTCTGTTGTAAGTGAGCATGGGTTCCGTGAATATCATGCCTATTGTTTGGAATCACAGTATCAAGGGGATGATCTATGCATTTCTTTTTCTTTGTATCGCGATAAAAAAACGAATGGTGAAAAAGATGAATATGATCCAATGGAA # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCATATTGCATACGCAATTTAGAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 75496-74333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLSJ010000004.1 Sphingomonas paucimobilis strain 13935_NBRC Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75495 28 100.0 32 ............................ ATTTTATGAAAAAGATGCTCAAAGCAAAGCAC 75435 28 100.0 32 ............................ GCACAAACCGTATTGCTCTGACGATCTCGGTC 75375 28 96.4 32 .......................A.... ATTGAATGAGTAATTCGTAAAGTCGAATAACA 75315 28 96.4 32 ..C......................... AAAACGGATGGCATCCGCATTTTCATATCATC 75255 28 96.4 32 .C.......................... TCGGCCTGTGAAATGGTTTTGCCTTGCTTGAG 75195 28 96.4 32 .......................A.... GAAGGGTGGCGACTTAATTTTTGATACGCGTT 75135 28 96.4 32 .......................A.... AGATGTAGAAAAAATTAAAAAATTGGCGGAAT 75075 28 96.4 32 .......................A.... ACGACACAAAACTAAGAGAACTTAGGAATGTA 75015 28 100.0 32 ............................ CATCTATTTTTAATTTCAATGAACACGGCGTT 74955 28 100.0 32 ............................ ATTAACTCCGCTTTATTGAGCAAAAGTGCAGG 74895 28 100.0 32 ............................ ATTTATTGCGCAATCTTTAAGACTTCAAGATT 74835 28 100.0 32 ............................ AAACAAAATATTGAATTAGAGCAATTAAAGTT 74775 28 96.4 32 .......................A.... TGAAAAACGACGTAAAAATGCTGTTTTATGTA 74715 28 96.4 26 .......................A.... AATTAAAATTGGCGTAGTCACGTAAA 74661 28 78.6 32 AACTT..................A.... AAAGAATACGGGACTTTTTTTGTATCTACTGA 74601 28 100.0 32 ............................ AATCGATAAAAATTTTCATTCTCTCAAATAAG 74541 27 89.3 32 ...............C........A-.. CATTTTAGAAGAGTCTGGGGCTGCATCCCAAT A [74519] 74481 28 100.0 32 ............................ AGTGTCTTCTTTTCACACTGTCCTTTAGAGTT 74421 28 100.0 32 ............................ GATGGATAATGCAGATTACACTTTGAATTGTT 74361 28 89.3 0 .......................A..AG | A [74335] ========== ====== ====== ====== ============================ ================================ ================== 20 28 96.4 32 GTTCCATATTGCATATGCAATTTGTTGA # Left flank : TCCATATTGCATATGCAATTTGTTGATTATGTAAATACGCCACAAGCGAAAACCCGTAGTTCCATATTGCATATGCAATTTATTGAGTTTTAAATTTTTCTATAAGAATAAGTATCGAGTTCCACATTGCATATGCAATTTAATTAGGAAACCCGCAGAAATGTGGGTTTTTTTTATTACCTATCGATTACGAAGAACGTAGCTCCATTGCGCGTCAGGAGACAAAAACCCCGCTTTATCATGCGAAAAAGGGTTTAATGTGTACTTATAGAGTCACTGGAATGATTGAAAACCAACAAGCCAAATTCGGTTAAGCCTATAGACCATATTTAAAGTGGCTTTTTATTTGCATCTGAGATATCCATTAAAACCCAATTTTTGCAACATTTAGAAAATGATCTATAAAACATCGATTTGCGCGACATGGGTTTATATTAGGTATATTTCTGAAAAACAGTATAAAATATTGTTTTTACGCTGTATTTGCGTTTTAATGGATT # Right flank : GAAACCCGCAGAAATGTGGGTTTTTTTACCTATCGATTACGAAGAACGTAGCGATTAATCAGCGCATACGACCTTAAAAGCATACCTTTCAGAGAAAGGATTTTGAAAATCTCACCGTGAATATCTAAAATAATATGCATTATATAATATACATTAAGGGGTAAATGCGTTATAATTTACTTATACAAACAAAGGGCAAGATAGCCCAGTCGGAGAAGCATGAATCAAACAGAATTGCAGCACTTTATTTTAAGCTATGCCGTTCAATTGGATGAGGGAAATCCATTGACTGTAGAAGCGGTTATTAGTGATGTCGAGCCAAGCCTTATTGAGCTAATTCGCACTCTTCATTTCCAATCTGTACATAAAAACCTGAGCGCGTTATCAGATGACAAGTTGGGTGATATTGAGAATTTCTTTAAATCACGCTACTTAGAAACAATTGAATTAAGTTCTGGTAATGTTTTAAGTATTACGGATTACACGCCACTTGACGATGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCATATTGCATATGCAATTTGTTGA # Alternate repeat : GTTCCATATTGCATATGCAATTTATTGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 4 76898-75849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLSJ010000004.1 Sphingomonas paucimobilis strain 13935_NBRC Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76897 28 92.9 32 .......................G...G AATTTATACAACAGATGCAAGTAGACAGAAGC 76837 28 92.9 32 .......................G...G TTTCAATGTTGTTCATTTAAAAAACACAAATC 76777 28 92.9 32 .......................G...G TACGAGTGATTGAGCGAAATATAAATTTCGTG 76717 28 96.4 32 .......................G.... ATTCGGGATGCCCTGCTCTGACTGTTAAAAAT 76657 28 100.0 32 ............................ CCTTTTTTTTAACTCAGAGTTTTGCATCTTAA 76597 28 96.4 32 .......................G.... TTTACGCCGTTTAGCTTAAGTACGCGAACTCT 76537 28 96.4 32 T........................... CCTTTTTTTTAACTCAGAGTTTTGCATCTTAA 76477 28 96.4 32 .......................G.... TTTACGCCGTTTAGCTTAAGTACGCGAACTCT 76417 28 96.4 32 T........................... TAGGGAGTTCGAGATCACCAGTTCCCTAGTTT 76357 28 100.0 32 ............................ ATTACAAAGCAATGCTTGCCCAGTACGGAGAA 76297 28 100.0 32 ............................ AAAGACCCGCCATTTTCAACCGCTCGCGCATA 76237 28 96.4 32 .......................G.... CCCTATTATCGGGATACCTTAAAAAACAAAAC 76177 28 100.0 32 ............................ ACGTTTTTTTGACTCAGAGTTTTGCATCTTAA 76117 28 96.4 32 .......................G.... CCCTATTATCGGGATACCTTAAAAAACAAAAC 76057 28 100.0 32 ............................ ACGATTTTTTGACTCAGAGTTTTGCATCTTAA 75997 28 96.4 32 .......................G.... TTATGTAAATACGCCACAAGCGAAAACCCGTA 75937 28 100.0 32 ............................ GTTTTAAATTTTTCTATAAGAATAAGTATCGA 75877 28 89.3 0 ......C...................AG | A [75851] ========== ====== ====== ====== ============================ ================================ ================== 18 28 96.6 32 GTTCCATATTGCATATGCAATTTATTGA # Left flank : CATCACTTTGAATGGTTTTAGATTCACTTGAGTCTATATTTACAATGCCATTAACTGGAATTCTAAAAACATCACAAAGACCTTGTTCTCTGGGTAGCCCCTCAAAATCTTCTTTAAACATGGGAACCAATCGATCTTCGATCAACTTATAGGATTCGCTTAGCATCATATATTCCCTTAGATATGTGAATGCAATTCTATATGATTTATAATTCAAGTTTCAAGGAAAATTTCGTTTTCATGCGAAAAAGGGTTTAATGTGTACTTATAGAGTCACTGGAATGATTGAAAACCAACAAGCCAAATTCGGTTAAGCCTATAGACCATATTTAAAGTGGCTTTTTATTTGCATCTGAGATAACCATTAAAACCCAATTTTTGCAACATTTAGAAAATGATCTATAAAACAGCGATTTGCGCGGCATGGGTTTATATTAGGTATAATTCTGAAAAACAGTATAAAATATTGTTTGTACGTTGTATTTGCGTTTTAATGGATT # Right flank : GAAACCCGCAGAAATGTGGGTTTTTTTTATTACCTATCGATTACGAAGAACGTAGCTCCATTGCGCGTCAGGAGACAAAAACCCCGCTTTATCATGCGAAAAAGGGTTTAATGTGTACTTATAGAGTCACTGGAATGATTGAAAACCAACAAGCCAAATTCGGTTAAGCCTATAGACCATATTTAAAGTGGCTTTTTATTTGCATCTGAGATATCCATTAAAACCCAATTTTTGCAACATTTAGAAAATGATCTATAAAACATCGATTTGCGCGACATGGGTTTATATTAGGTATATTTCTGAAAAACAGTATAAAATATTGTTTTTACGCTGTATTTGCGTTTTAATGGATTGTTCCATATTGCATATGCAATTTGTTGAATTTTATGAAAAAGATGCTCAAAGCAAAGCACGTTCCATATTGCATATGCAATTTGTTGAGCACAAACCGTATTGCTCTGACGATCTCGGTCGTTCCATATTGCATATGCAATTTATTG # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCATATTGCATATGCAATTTATTGA # Alternate repeat : GTTCCATATTGCATATGCAATTTGTTGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //