Array 1 24145-25433 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXH01000143.1 Pseudomonas aeruginosa isolate S, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24145 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 24205 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 24264 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 24324 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 24384 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 24444 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 24504 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 24564 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 24625 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 24685 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 24745 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 24805 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 24865 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 24925 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 24985 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 25046 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 25106 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 25166 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 25226 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 25286 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 25346 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 25406 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35837-34307 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXH01000143.1 Pseudomonas aeruginosa isolate S, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35836 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 35776 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 35716 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 35656 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 35596 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 35536 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 35475 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 35415 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 35355 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 35295 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 35235 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 35175 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 35115 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 35055 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 34995 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 34935 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 34875 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 34815 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 34755 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 34695 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 34635 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 34575 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 34515 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 34455 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 34395 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 34334 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //