Array 1 35813-34404 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCH01000002.1 Moraxella catarrhalis strain ATCC43617a ATCC43617-2_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35812 28 100.0 33 ............................ ATCACGCCTAATAGCACCTCCGAGCTTGTCAGT 35751 28 100.0 32 ............................ TTTGGCATGAGCATCTGAGAAATACCGCCTAC 35691 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 35631 28 100.0 32 ............................ TTTGGCTAAAATGTACCCACATTTAGGCATTC 35571 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 35511 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 35451 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 35391 28 100.0 32 ............................ AATCAGGGGGCAAAGGACGCACGCCACAAATT 35331 28 100.0 32 ............................ CAAAAATGATGGCCACAAAGTCAAACACCCAC 35271 28 100.0 32 ............................ CTAGCCGCTGGCATCATGCTGACCGCTTTGAT 35211 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 35151 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 35091 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 35031 28 100.0 32 ............................ GAGCTTTGACAAGAAAGCAAGAGCAATTAACT 34971 28 96.4 32 .......G.................... CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 34911 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 34851 28 100.0 32 ............................ CTGCTAGTCGCATGAAAATTAACAGCAATGGC 34791 28 100.0 32 ............................ AAATCACGGATAGATGATGTATGACCATTCAC 34731 28 100.0 32 ............................ AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT 34671 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 34611 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATC 34551 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 34491 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 34431 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.6 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //