Array 1 9969-10689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGJ010000047.1 Bacteroides pyogenes strain DD31 JD43_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 9969 36 100.0 30 .................................... TAAGTTTTTTAGTTAACTTTTTCATGTTAG 10035 36 100.0 30 .................................... ATCCAGCTGATAGGCTATGGCACCGGTTTC 10101 36 100.0 30 .................................... AATCTTCATAAGTTGGTTCAAAATATTCCA 10167 36 100.0 30 .................................... GATAAGGCAAATAGGGCTGTTTTGGATTTA 10233 36 100.0 30 .................................... AGTAACAAACCTTAACCCGGGGCTTTACCC 10299 36 100.0 30 .................................... AGATAAAATAAAATGCCGCAAAAGCTATCG 10365 36 100.0 30 .................................... CCATCCTGCACGCATCAGTATACGCGTCTC 10431 36 100.0 30 .................................... TATCCTTACTTTGTATACTTATGTACCTCT 10497 36 100.0 30 .................................... TAAAGTATTCGCCTCTTATTTCTTCACATT 10563 36 88.9 55 ...............A....A............TG. TATCGCTGACGAGTGGATAGATAACGGATTCAAAATCACCTGTGTACTTGCCGCT 10654 36 80.6 0 .....A.......T...C.......A..C..G...T | ========== ====== ====== ====== ==================================== ======================================================= ================== 11 36 97.2 33 GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Left flank : CGTATCTAAGTTGATGCGTTATTGTTACGATGGGCGGGTAAAGGGGTTGATGCCTTATTTTGCCAACCATGAAGCAACACAAGAGCAAGTGGAGGTGGAATTGCGTCATTATGAAGATCATCGCAGACGTGTATTTGATTGGGTTTTTGCTTTGGAAAAATCCGTTTTGAAGAATGAAAAGCTGAGAAGGTTGTATGAAAAATCTCAGGAAGGATGTGAGCATCGCAGATGCATAGATGCGTTGAGAAAGGCAACACTCGTTTCGGAAGAAGAATATAAGTTTCTTGTCCATATTCGTAATAAGTCTGCTCATAATCAATTCCCAGACTTGGAATTTGGGAAACTGACCCCGAACGTTACATCTGGTTTTTGCGAATGTATATGGAGTAAATATAAAGCAATAATTTGTCGAATCATTCCTTTTATAGATCCCGAAAGAAGATTTTTTGGGAAACTTTTGGAGCAGAAATAATTAACCAGTAATAGGTTAGGAAAGTTTG # Right flank : TGTATATAGAACCTTCCAATGAGTTTCGGGTAGCTAAAAAATCGGGGAAAGGAAGATTTGTAGGCGAATAAAAGAACTCACTGACTGCATAAAGTATACATTACAGTCAGTGAATCTTAATTTTGAGAGAAGTAGAAAGATGTAGGAGAATAGAACTACTTACCCTATTTTTTGTTTATAGAATGATAACCATATCCGCCTAAACACCTGACGAAGAAAAGAGAAACACCGCTATTAATAGTCGCTGCAAACTTTATTCAGGTCGACGGTGAAACCATCGTTCAACGGCATGAATTTGCCTTTTCGTTTCAGAAATTCTATCAATTCGTCGATATTCATGTTTTCGGCGGAGCAGGTGTAAAAATGCCGGGAAATGCTGAACCTCTTGATAATGGCTTCTTTCAGGCTGGCTTCCCGCCATAAACGGTAACAAATGTTACATTCATCGCCCGGATAATGAGATAATAGAAAGCGGTTTAGAAGATTTACGTAAATTTTGT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1815-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGJ010000031.1 Bacteroides pyogenes strain DD31 JD43_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1814 29 100.0 34 ............................. TCGCAAGGTCGAGGATAGCCTGTCGTTTTTGCTG 1751 29 100.0 38 ............................. TCCCCTGATGTTGGCTTGCTCTACAAAATAGTAGTAGA 1684 29 100.0 36 ............................. AAAAATAAACAATGGAATTATTGAGGCTAAGAAAGG 1619 29 100.0 35 ............................. ATGTTTCATTACGATAGAACTTTTTCATCGTTATT 1555 29 100.0 34 ............................. AACTCACCCGGAAACTTCTGCGGGCGCTCGGGCC 1492 29 100.0 36 ............................. GGAGATAGACACAGCGAGTGGAATTGCATCATTTTC 1427 29 100.0 35 ............................. TTGTTAACATTGTCGATTAAGAGTCTATCGCTATT 1363 29 100.0 35 ............................. AGAAATATGCCGAGGAGGAGGAACGCCGCCGTAAG 1299 29 100.0 36 ............................. TGAGTTGGTTTCTGATACTCCGTATAAATAGGCAAT 1234 29 100.0 37 ............................. TTAGCTTGTTAATTGCATTGCGGAGCGACTCTACCTG 1168 29 100.0 36 ............................. CCCTGAACTTCTCCGCTTCCGCGTTAGCTTCGTCCT 1103 29 100.0 36 ............................. AACGCAAGGAAAATCAAAGGCTTTTTTATACTCTTT 1038 29 100.0 34 ............................. AGAAATCGGCATAGGCGAGAAGTTCTATATATTC 975 29 100.0 35 ............................. GAACATCCTGTAAGGCCTTATAGTATACACCATTA 911 29 100.0 34 ............................. AACAACCAACTGGGTTAAAAACAACCCAAACAAC 848 29 100.0 38 ............................. AGATGAGAGAAAGCAGAGTTCCAAAACAACTCCTCATA 781 29 100.0 33 ............................. CAGCATTGGATGCGAATTCGATTATTCTACCTT 719 29 100.0 36 ............................. GAGAGAAGTTATATGAGTTACTTGATGATAGCGAAG 654 29 100.0 34 ............................. AAGGGTGATCAGGGCGTTCCCGGAGCCAAGGGCG 591 29 100.0 36 ............................. TGGAGTAGAGGGCATCGAGGAGAAGTCCGCGGCGGA 526 29 100.0 35 ............................. TTGCAATCTGGCGATCAATAACGGAGGTGAATTCA 462 29 100.0 37 ............................. AGAAATGAACGAGCTTAAACATAATCTGCGAGTAGAG 396 29 100.0 36 ............................. ATAACTCCTGTCAGAAAGCGGAGTGTTGGCGGGAAC 331 29 100.0 35 ............................. TGACGATTTTCACACCCGGAGCGCCCAGGGCGGAG 267 29 100.0 35 ............................. AAACATAATCGTGTATTTTAAGATTAGACAATGCT 203 29 100.0 36 ............................. GGCGAACCTTCGATAACAAGGAAGCCGCAATTGCTT 138 29 100.0 36 ............................. ATGATACACTGTCCGCTACCGCGTTTCGCAGCCTTG 73 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 100.0 36 CTTTTAATTGAACCATTTGGAATTGAAAT # Left flank : AAACCGTTTAAAATGTGGTGGTGAATAATGTACATAATTTTAGTTTATGATTGTGGCGAAAAGCGTGTAAGTAAAATGTTGAAGCTCTGTCGGAAATATTTGAATTGGATACAAAATTCTGTTTTTGAAGGTGAAATTTCAGAGGTAAAACTAAAAGAATTAACTTTAAAAGCTCAAAAAATAATGGATATGAATACTGATAGTTTGATTATTTTTTCCGGTAGAAGTGAGAAGTGGCTTGACAAGCAAATTGTTGGGAAAGAAAGAAGTAGTATAGACAATTTTTTATAATTGTGCGTCGATGTTCTTCACTTCAAGCAGATATTAGGAAAAGCCTGTCTATTATGTTCTTTGACATTCTGAAAATCAATGTATTATAATGTTGTCGATAACCAGTGATTTTCTTATCATTGAATATCGACAAGTTTTTTAAATTTAAAATGCTCTTTCTGAAAAATATTTGATTGAAAATCAATTGCTTATTATTCCTTTAAGTATGG # Right flank : TAAGAACTATCCATTAAAAAAAAGAACTGCGGTTTCTTTTAATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATTGAACCATTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //