Array 1 205917-205307 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QKRL01000002.1 Listeria monocytogenes strain 12-106 HHHGNHNE_2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    205916	    29	 100.0	    35	.............................	ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC  	
    205852	    29	 100.0	    36	.............................	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 	
    205787	    29	 100.0	    35	.............................	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA  	
    205723	    29	 100.0	    34	.............................	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA   	
    205660	    29	 100.0	    35	.............................	CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT  	
    205596	    29	  96.6	    36	A............................	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 	
    205531	    29	 100.0	    35	.............................	TTTGTTGAATCAACGGATATAGATTTTACAATTTC  	
    205467	    29	 100.0	    37	.............................	TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT	
    205401	    29	  75.9	    36	......T.C.A.C...CA...T.......	GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC 	G [205377]
    205335	    29	  79.3	     0	......A..T....AGA......A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        10	    29	  95.2	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                     	       

# Left flank :   GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTTGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG
# Right flank :  GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT

# Questionable array : NO	 Score: 6.02
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [14-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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