Array 1 8250-12477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGF01000301.1 Xanthomonas oryzae pv. oryzae strain IXO365 contig_301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 8250 31 100.0 34 ............................... AATCGCCTCGTGCGCGAGCGCTACATCACGCCTA 8315 31 100.0 34 ............................... CTGAAGCGTCTATCCCGGCACGTCAGCCCGTCAA 8380 31 100.0 35 ............................... AGAGCTGTAGCACATATGGCCGATCTGCCCGAACA 8446 31 100.0 34 ............................... TGGAAGCCCTTGATGATCGCCTGCGTGTCGTCCG 8511 31 100.0 35 ............................... TTGTTGCGTATCAATGCCCCTGTTCCGTCAGCATC 8577 31 100.0 35 ............................... GAAAAGAGGGCAGCACCCATGAAGCGATGGATAAA 8643 31 100.0 35 ............................... CTCAATGACGTTATTACTCTCATCGATCCATTGCA 8709 31 100.0 33 ............................... AGGCATTGGTATCTTCCGAAATCAGCCTAGGCA 8773 31 100.0 35 ............................... GCACGTCAAAGCACGCCCGCGCAGATACAAGATTT 8839 31 100.0 36 ............................... ACTGAGCTGAGTGCAACCTGGGAAGTATCCGGGCCG 8906 31 100.0 33 ............................... TTCACTGGTGACAACATACGCAGTAACACTCCC 8970 31 100.0 35 ............................... ACTAAAGTAAACGCGAACTTTGCGGATGTGCAGGC 9036 31 100.0 35 ............................... GCCTTCGTTCGATGCAAATGGAATTGCAACAGTAG 9102 31 100.0 36 ............................... AGATGTTGTCAGGACTATGACATACGAGTCAGCAGT 9169 31 100.0 36 ............................... TTGAATCCTGGGGATGTGTATGCAACCTCGCCGGCA 9236 31 100.0 34 ............................... TGTACTCTTCCTTGACCCACCGGGGCGCATCCGC 9301 31 100.0 34 ............................... TGGCACTATTGCTGATGTGGTTGGGTTTTTAACT 9366 31 96.8 36 ..............................A AGGTCTGCCGTGACTGTGTAGACCTGCTCCTGCACC 9433 31 100.0 35 ............................... ACTTTTGGCTAGATTATGAGGCATGGGTATTGCAC 9499 31 100.0 35 ............................... ATCGTATGACTCTTAAAAAGGATGTGCCACCCGGC 9565 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 9632 31 100.0 34 ............................... AATATTGCACAAAGGACAACAGGTGAGACGGCAC 9697 31 100.0 35 ............................... GTGCCTAGGGTCTTCCCAGCGACGCTCGGCACATC 9763 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 9829 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 9896 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 9961 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 10026 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 10092 31 100.0 34 ............................... AATGCCCTTGCTTCAGATAGACAAAGCGATGCCG 10157 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 10222 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 10288 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 10353 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 10416 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 10480 31 100.0 33 ............................... ACTGAGCGCCGGCAGCGCGTTGCCGACGCCCAC 10544 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 10608 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 10674 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 10739 31 100.0 34 ............................... GAGTTGTTACGCGCCTGGCGCCCCTTGGACAGGC 10804 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 10870 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 10935 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 11000 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 11066 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 11133 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 11199 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 11268 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 11334 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 11398 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 11464 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 11528 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 11593 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 11658 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 11724 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 11792 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 11858 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 11924 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 11990 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 12055 31 100.0 33 ............................... TTGGTCTGCGATACTACTACTGGAACAGTGTTA 12119 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 12185 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 12251 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 12316 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 12381 31 100.0 35 ............................... TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 12447 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 65 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGCCCGGCGCGTAACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //