Array 1 14532-13406 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAOS01000032.1 Salmonella enterica subsp. enterica serovar Heidelberg strain ABB07-SB3031 NODE_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14531 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 14470 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 14409 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 14348 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 14287 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 14226 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 14165 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 14104 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 14043 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 13982 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 13921 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 13860 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 13799 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 13738 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 13677 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 13616 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 13555 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 13494 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 13433 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17245-15581 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAOS01000095.1 Salmonella enterica subsp. enterica serovar Heidelberg strain ABB07-SB3031 NODE_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17244 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 17183 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 17122 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 17061 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 16994 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 16933 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 16872 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 16811 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 16750 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 16689 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 16628 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 16567 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 16506 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 16445 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 16384 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 16323 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 16262 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 16201 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 16140 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 16037 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 15976 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 15915 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 15854 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 15793 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 15732 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 15671 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 15610 29 96.6 0 A............................ | A [15583] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //