Array 1 170455-172335 **** Predicted by CRISPRDetect 2.4 *** >NC_017311.1 Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 170455 32 100.0 33 ................................ CAGTCTCGTTACCCTGTCGCGGAGGGCGTCGAT 170520 32 100.0 35 ................................ GCCATGCTCAGGCTGGCGAGTGCGCCACTCATCAA 170587 32 100.0 36 ................................ CTTGTTTGGAGGCACCAAGAATCAATCAGGCATCGC 170655 32 100.0 33 ................................ TTGAGCGCGGCGAGTGCGTGGACATCGTGGCGA 170720 32 100.0 34 ................................ ATCACACACCTCGCTTGCTCTACGTTCCTGCATC 170786 32 100.0 32 ................................ CAGTTGGAGGAAGACCATCAACAGTTCCATAG 170850 32 100.0 34 ................................ ACGCCGCCGGTCGCGCCGTGCTCAAGTGCATTTG 170916 32 100.0 35 ................................ TGCGATGCACTGCACCGCCATGCCAGCCTGCGCCG 170983 32 100.0 35 ................................ CGCGCCGCAGGGTTTCAAGCCGCCACGCTGGACGG 171050 32 100.0 35 ................................ TCAACGCCCACGCCCTCCGCGATGCACAAGTGGCG 171117 32 100.0 35 ................................ GCCCCGACCGACATGGTGCAGCGTGCCATCACGGG 171184 32 100.0 33 ................................ GGCAGAAGGCGCGTGAGGTCGCAGCCGAACTTG 171249 32 100.0 33 ................................ CGAAGAATTACGCGCAGTACGAAATTGACGAGC 171314 32 100.0 36 ................................ ATGGCGGTTGCTGACGTTGCGATGATGCAGCGGCAC 171382 32 100.0 33 ................................ AAGTCGCAGGCTTGCGAAGCCTACACGCGCAAG 171447 32 100.0 34 ................................ ACGGTGATGCCAAGAAGTGTCACAAGCTCGTAGT 171513 32 100.0 33 ................................ AGCCTCAACGCGCACGGGGCAGTGTACTCCGCG 171578 32 100.0 33 ................................ TCCCTGGCGGCGCAGAGCGTACTGTTCAGGGAT 171643 32 100.0 33 ................................ GATCTCATAGGCGTTATGGAGCGTGGCTCGTGA 171708 32 100.0 34 ................................ ATCCAGATACCGCAGGATGATGACAACTACCTGT 171774 32 100.0 33 ................................ AACATCGGAACGGATGTTGACCGTGTTGGTGGA 171839 32 96.9 34 ..........G..................... GACCTGCCGGTGGTGACAACGGCAATCCTGTTGC 171905 32 100.0 34 ................................ TACTATCCCCAAGCCGCCCGTCTCGAATCGGCAG 171971 32 100.0 35 ................................ CTGTGCATCGGTTGTGGCAGGCGTTGCAGCCTGAA 172038 32 100.0 35 ................................ ACCTGATCGATACGGTTATGCCCGTAACGCTGCGC 172105 32 96.9 33 ..........G..................... GCGGGCGGGGGCGGTGCATCGCTCGGCATCGAG 172170 32 100.0 35 ................................ AGCGAAAGTGCCCACGCATCAGTCACCTTGGCTAT 172237 32 93.8 33 ........T.G..................... AGCTCTCCCTCTTTGACGACAGCGCGGCACGCC 172302 32 75.0 0 ..........G.A....T.G.A..CG.C.... | CT [172319] ========== ====== ====== ====== ================================ ==================================== ================== 29 32 98.7 34 GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC # Left flank : GGCTACCCGCCCTTTGTATGGAAATGACGCCATGCTCGTATTGATAAGCTATGACGTGAGTTTCGAAGACCCGGGCGGACAGAGGCGTTTACGGCGCATCGCCAAGGCATGTCAGGACTATGGACAACGGGTGCAGTATTCGGTCTTCGAATGCGTGGTCGACCCTGCACAATGGGCGAAGCTCAAGCATCGGCTACTCAGCGAGATGGATAAAGAGAAGGATTGCCTGCGCTTCTACTATCTGGGGGCCAACTGGAGAAACAAGGTCGAACATGTGGGCGCAAAGCCCGCCTACGACCCAGAAGGCCCCCTGATTCTGTAGCGCGAACCCCAAGCGACCCTGTTTTTCCCGGCAGGTTCGCGAACATGACAATGACCTGTTTTCATTGAATTGCGTAACCTTTAATGCAGGCTGGTCACACATCTTGGCGGTGCTGCTGGCCCGGTTCGCGGAACCCTCGTCGCAAGGTCAATACTGCCAACGTGTTTGATGGCCGACA # Right flank : CCCGCGAAATGACCACATAACCGGGAGATTCAGCGGGGCCGTCACCCGCCTCACAGGAAGAGCAGTAATGACAGGGCCATCACCCCCATGCCGGAGAAGACGCCCAGAATGCACAGGTGGTGCTCGCCATACTCCTCCGCCGACGGGAGCAACTGGTCGAGCGAGATATAGACCATGATGCCCGCCACAGAGGCGAAGAGCAGACCGAACACCATGGGCGTGAAGAAGGGACGCAGCACCACATATCCCACCAGGGCCCCTATCGGTTCGGACACGCCGGAGAGAAAGGAATAGAGGAACGCCTTCCGGCGGTCGCCCGTGGCGTAGTAGATGGGCACGGAGACGGCCATGCCCTCGGGGATATTGTGAATGGCGATGGCGACGGCGATGGCGACGCCAAGCGCCGGGTCGCTCAAGGCTGCCGAAAAGGCGGCCAGCCCCTCCGGGAAGTTGTGGATGCCGATGGCCACGGCCGCCAGCACCCCTGCCCGCTTGAGCCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //