Array 1 12398-12579 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000115.1 Paenibacillus sp. 598K contig_0115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================== ================== 12398 25 92.0 27 ........TA............... GCCTACGGGACGTCCGACGCACCACTG 12450 25 100.0 27 ......................... CATCACAGACCGACCAGCGCGCCGCCG 12502 25 96.0 27 .......................A. GGCTTCGTACCACCCGGAGCACCGCTC 12554 25 100.0 0 ......................... | A [12577] ========== ====== ====== ====== ========================= =========================== ================== 4 25 97.0 27 TAACTCTACTTTCTAGAGTTATTCG # Left flank : CAGCTTCCTCGCCGAGACGCGTGAGCTCGCTGACGCCTGCAGCCGATCTACCGGGCGACGCATCGAGATGTCAGCTTACGTAGGCTCCTGGTATGAGCGCTACTATGAGCACGGGGCCAACTGGTGCAGCCCTCGCTTCCAGCCGGATGCCCGCCTTAGCCTGGAGCCAGCGCCTCTTTACACACCATCCTATCTCCGCACCGGCTACACCGACCATCTGGACTTCCTGATCATCGGTGCTTACCAGCAGACGGCGGGCGAGATCGACAAGTATGTGACGCAGGCGCAGATCGTCACGATGGGCGAGCTGCCGATCTACACCGGTCTGGCTGTAGGCCAACTGGCCGGTACGCCGCTGCTCGCGGAGGCGTGTCGGCTCGCACTCCAGCGCAGCGACGGGATCATGCTGTTCGACGCCTCGCATATCGACGATTGGGGAACGTTGCGGGCTGTGCTTGGGCAGGAGTAGGCATTGGCGCGATTAACCCGACGTGTTGATG # Right flank : GGCCTCGGATCGCCCGACGCACCGTTTGTAAGCCGCCGCCGTTGCCGTAACGCTCGCCACAGCGCTTATTTGCGTGTTTTTGCGCTTCCCGACAACGTAACGCTTGCCACGGCGCTTATTTTCAAAAAATTGACCTCTTAGGCGCTGTTTTGTCCAAATAAGCTCGCTGGCGAGCGTTAGCCTGCGGGTCGCCGCCTTTTGGGCCAAATAAGCTCCTTGGCGAGCGTTAGGATTATGGCCGCCTACAGTCCGTGTCCGTGAACCCCCTAGGCTACAGTGCGCTAGTCCTTCATACCGGTAGTCGCCATCGTGTACTAATCTTTCATACCGGAGGTCGCCATCGTCTGGATGACACTGCTCTGCGAGACGATGAACAGGCTGATCGGCACGATCATGATGACCAGCGCCACCGCCGCGCCGACCCCGGCCCGGGCGATCCCGCCCTGGATGATCTGGCTGAGGGCGTAGTTGAGCGGTTTCAGATTCTCGCTGTAGATGAA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAACTCTACTTTCTAGAGTTATTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 20966-21128 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000126.1 Paenibacillus sp. 598K contig_0126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 20966 31 96.8 36 .............C................. ATTTGACCTGGAATGGTATGCGGTCATAATTGGCGG 21033 31 100.0 35 ............................... ACGGGTGGGCGTTGTCAGCGCGTTTATGCTGGCAG 21099 30 93.5 0 ...................A-.......... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 96.8 36 GTCGCGGCCCGTAGGGGTCGTGTGGATTGAA # Left flank : TCACGCAACTGTCCCATACTGCTCGCGAGCGTTGGCAGCCTGACCTCATAATAGAGGACGAATACGGCTGCAAGCTGTTCTACCGAGCGCTCGGCGGTTACCTGCGCTTCAACTATGCCAACGAAACCGAGGTTGCGCTCATCGCAGACGGTGATACCCCTCCGCTCAAAGCCGAGATGGAGAACTGGCTGAGCGACACCGGCGGACAACGAATGAAATAGCTGTGGCGCGATGTGTGAGCATGCCTAGGTGCGCCCATGTACCAGTATGTGGTATATTAGTTGGTAAGTGTAGCCTAGGACGAGGATTTGTCGCTGTATGTTCTCAGCTGATGCGAATGCAGAACGCCCATGATTTCCCTGGGGGGATTCGCACTATGATTTTAATTGGAATGATAGGATTCCGGTCCTTTCAATCGTTTTATTGATTCAATCCATCATAAGGAAGTGGATTGCAATCAAACAGTAGAGGATCCAAGCGCTTTTTTGCTGTTTTTCGCT # Right flank : AATAATCTCTTGGCTTGACTCAAACCAGCGGAATTCTCGACAGTCGCATTCTCTCTAAGTCATAGATTGAAATCACGTCCTTTAAACAGTAATCTATAGCTAAACAGGTTGCGCCTTGGGTACATTGGATTGGAGGAAATGCCGATGCAAGAGAATGAGCAGCAACACAACGCTTCCACCCCTCTTGGGCTAAGTGAGCTTCAATGTGAGGAAATCACCAAAACGCTTGTTAAAACCATCGCTCCAGCCTCCATAATAATGTTCGGCTCTTTGGCCAAGGGCACATTTCGTGAAGAAAGCGACCTTGATCTTGCCTACCTGCCTGATAAGCAAAAACTGAACGCATACGAGCGGTTTAGGGTGGCTGCAAAGCTCGCGGACATCGTCGGGCGAGAAGTCGATTTGGTTGATTTTAATGACGCCAGTCCTGTCCTGCAAATACAGATCATCGAGAGTGGTCTGCTGCTCTACGACGCCTGCCCTAAGATGCGACAGGAACG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCCGTAGGGGTCGTGTGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 22327-22824 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000126.1 Paenibacillus sp. 598K contig_0126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 22327 33 97.0 33 ................................A GAGCCAATCGATAAAGGCCAAGGTCTCCGCTGT 22393 33 100.0 33 ................................. CGCATAGTGCCATAGCAGCATGCGGGCAGCCGA 22459 33 100.0 34 ................................. GCCGAGGATCGTCGCCAGAAACTCCTTGATGCTT 22526 33 97.0 33 .A............................... ATCCCCTCACCACCTTCCTGTACTTGTGTCTCT 22592 33 100.0 34 ................................. GACTCGTCAAAAGGAGACTTACCAATAGCGAATT 22659 33 100.0 33 ................................. TTGCGTAGCTCGGCTGGAACTTCTGGCTTGTTA 22725 33 97.0 33 ..........G...................... CAGAACACGACGATCTCGCCCTTAGCGCCTTTC 22791 33 93.9 0 ..........G.............A........ | G [22801] ========== ====== ====== ====== ================================= ================================== ================== 8 33 98.1 33 GTCGCATTCCATACGGAATGCGTGGATTGAAAT # Left flank : CAATTATTTTGAATCTCCAAAGATGCTGCGAGGCATGTATAGACCTAGCAATGCATGTCGTAGCCGAGCTGCGGACAGGCGTGCCACAGTCCAGTCGCGATGCATTCGATCTCTTGCATAATAACAATATTATTAATAGCGACCTAACGGACCGCTTAAAAGCGATGGTCGGTTTCCGCAATATTGCTGTCCATGATTACCAAGCCGTACGCTTGGAAATCTTGAAAGCTATTCTGGACAATCATTTGGAGGATTTTACACGGTTCACGTCCTCGCTGAAGCAATATGCAAGCAACCAATCCCGCTAGAAAATATAGTATCTGCATTTGGTGCGAACCCCTAGCTCACATGAAATTCCAAGGGGATTCGCACCTCATAATTTGTCGGATATAGTCGAATCGAACAATTCTAGCCATTGATGACGCTTTGCGTTATACTCTTTTTAATAAGAGATTGGCTCATATTCATGCAAATGACGCATGAAAGCTTTGTTTTTCGCT # Right flank : TACGTGAATGACATGACCAACGCCGAATGGGACAGTCCCATTCCGCACGAGCACGTAGACTTAAACATCCACCAATCATATATTTGAATCTCCCATTGGGCGCATCCGTATAGAAGCGCAGGGAAGTACTAAGCACCCTGTGACTAATAGAAGTTGGAGGTCGAACAATGGATAATAAAGAACGGTTTACTAATCGAGTCGACGCCTATGTGAAATATCGTCCGAGCTATCCCCGGGAGGCTGTGGATTATTTGTATGCCTCTGTTGGGTTGCGGGCGGAAAGTCGGATTGCAGATATCGGGGCGGGCACGGGGATATTTTCGCAGCTGCTGCTCGAGCGCGGCAGTCGGGTCGTCGCCGTTGAACCGAACCCGGCCATGCGCGAAGCTGCTATACAACGGTTGGGTAGCGCTCCAAATTATGAAGCTGTATCCGGCAGTGCAGAAGCTACGGGATTGCCCAACCAATCCGTCGACTTTATTGTTTGCGCACAGGCCTTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCCATACGGAATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 46576-47315 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000019.1 Paenibacillus sp. 598K contig_0019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================== ================== 46576 32 96.9 33 .........T...................... AGCCGCCGCACCGGCACGCGGATTAAGTTAATC 46641 32 93.8 33 .........T...............G...... AGCACGCCTTCGCTCGTCAACTGGTTAATCCAA 46706 32 96.9 33 .........T...................... ATAAACTGGATATCCATAGTTACAATATTCCAA 46771 32 96.9 33 .........T...................... TCTGGCAATCAGTCCTGTGCAATCCATACCAAC 46836 32 96.9 34 .........T...................... ACCGATCTGATCCGTCTTTCCCCGGCGATCAAGT 46902 32 100.0 37 ................................ AGTGCTCTCTCGGGTGGTTAATATCACGCCAATCGAT 46971 32 100.0 34 ................................ AGAGGAGACGATGACTTCACCCTGATCGTTACTA 47037 32 100.0 33 ................................ CGCTGCAAGACATCCCGTACAAAACGACCCAGA 47102 32 100.0 90 ................................ CGGGCATTTGGGCTGACGCTGGAGCGCGAGGGGGAGTCGCACCTCACGGATTGAAATTTGTGCCAGCATCTGGTCCTCTACGCTCGCCAA 47224 32 90.6 27 ..........GT................T... ATCTCCAGGATCAAACAGCTGAGTTTG 47283 32 59.4 0 AA.T.GAA.TGAAC....A.A........... | A [47314] ========== ====== ====== ====== ================================ ========================================================================================== ================== 11 32 93.8 39 GTCGCACCTCACGTAGGTGCGTGGATTGAAAT # Left flank : GACGGGCGGGGCGGCCGCGTATCACGCATGGGCAATCGGCTACTATGAGATCGAGCTGGACCTGGCGTTGGTGGAAAAAGTGTTCGCGATGACGCCGATCGACGAGTATCTCCTGCAACGGTTGAATCCCGAGCTTACGTTGGACGACCTGCTCGAGGATCTGGAGGAGATCGGCTACCCTTATCAAAGGGATAGGTGATGGGACACGGACTTGTATTTATAGTCGAGATCGTTTATATGGTAGGGGAGAAATAATAGCGTTGGAATTGACTGTAGATGCGGCTTCATAGTACGCTGAGGTTAGTAGAAGATAATGGAAGCTTCGCTTCGTGGTGCGAATGTAGAGTGAACATGAAATCTCCGGGGGATTCGCACCTGATAAATGATTGAAATGAACGGAATTTGATGTTTTCTTTCGGAATTATGAGGGGAAAGAGCGGGATGAGAAGTAACTGTGTGATAAAATGGCTTAGTAGGAAGGCTTTTGGCCATTATTCGCT # Right flank : TAATCATAAACAAAACTAAAGTATTACGAAGTTAGCTGCTGCTCTTCAGTATTAACCCAAAGTTGTCCGACTCGTTGTACCCGTAAACGTCAAATGGTATCATTAAGAAAAAAGACTTTAAGTTTGATTTTTTATAATGTCGCATCTCATTTTGGAGGTGAGTGGAACATATGCCAATTAAGTCGGGATTTTTGAGCGATTATTTGACGGAATCCAATGCCAGTGAAAAGAACTTTTTTTTGAGCAGCAGTGTAATTGATCAACAACCATCCACTAAACCCAGAGATGAAGGCAAGCGAGCGATGGTATTGGCAATGGAGATTGAAGAGTTAAGAAGGAATTTCCCAAAGGGAGGTTATCCCAAAGCCAACAAGAATCGCGGTGACCGATGGTGCTGAATGATGAGGTTAAGAATAAGATTAAGTCTATTGTGAACCCCTTAAGAAGAAGGCTTGCTGTTTGCAGTTGGATTACAGAGGAATTTAAAAAAGAAGGCTTAT # Questionable array : NO Score: 8.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:-0.47, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGTAGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCTTACGTAGGTGCGTGGATTGAAATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 48861-49154 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000019.1 Paenibacillus sp. 598K contig_0019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 48861 32 100.0 33 ................................ CGTATCGGAGAACCAGCTGCCCGGGGGCGATCT 48926 32 100.0 34 ................................ GGCGTAACAGCTCGGCGCGCTGGGCCGTCCATGA 48992 32 87.5 34 .........CGT..A................. ATGCTATCATAAAGCCGCCCCATCCACAGAGTCG 49058 32 90.6 33 .........C.T..A................. AAATTCCGAACGGTCAGAAATCTGGGTTATTAC 49123 32 90.6 0 .........C....A...............T. | ========== ====== ====== ====== ================================ ================================== ================== 5 32 93.7 34 GTCGCACCTTACGTGGGTGCGTGGATTGAAAT # Left flank : CCTCATGTCAACCAAACCATGAAAGAAACCAGCTTTAAATAGGCCAACTAAAGTACAAACCAATTTATCGTAGCGAGCGGCTAACCGACGATTACGTTTGAGTTTGTTAAAGAGGCCTCTTGGACGGTCGATCCCCAACTCATGCTGGACGACCTGCTCGAGGATCTGGAGGAGATCGGCTACCCTTATCAAAGGGATAGGTAATGGGACACAAGAGCGTATATATTGTGGAGGTCTTAATAATTGTAGGGAAGAAATAGCGTTGGAATTGATTGTAGATGTGGCTTCATAGTACGCTGTGGTTAGTAGATTGTGGAGACGTCGCTTCCTGGTGCGAATGTGAAGTGAACATGAAAACCCCGGGAGATTCGCACCTGAGAAATGACTGATATGATCAGAATTTGATGTTCTCTTTCGTAATTATGGGGGAAAAAGAGCGGGATTGAGATGAGTTTGTGTGATCAATGGTTGAGTAGGGAGAGTTTTGGCCATTTTTCGCT # Right flank : TTGCTTCAGCTTTTTATTTAGCCAGCTTGTGGCACGAATCGTTATCGATGGTACTGATGAAAAGCTTCATATCCCCGCTGCTTCTCACCCCTAAGCTGTACTCACCCCTTCACCTATTCTACTTCTAAAAAATTTCAGCCCAAAAGGGAACCATTTTCCTCTTTAATCGTCTAATGCTCGAGGTGAACGGATTGCAGTTCGATTATTTGAACCACATTACCGGCGGATTGGACAAGAATCTCGTCCTGGAGGAGCTAATGCAGGCGTATGGCAAAGAGGTGTGGAACTTTGCTTATTTCCTGACGCGCCGGGCGGAGTTGGCCGATGATGTGACACAGGATGTGTTCGTCAAGGTCTATGAGCGGCTCTATTCCTTCCGGGGACAGTCCTCGGTGAAGACGTGGCTGTTCGCCATCACGCGCAATACCGCCAAGGACGCCCTGCACTCCTCCTGGCTGCGCAAGGTGATCCTCTTGCCCGTATGGCGACAGCGGGAGGTA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1610-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000024.1 Paenibacillus sp. 598K contig_0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1609 32 100.0 33 ................................ GCACGCGCGCCTCCAGCGTCTTAGCCGGTATGC 1544 32 100.0 34 ................................ TTTCTAAGTATATCACAAGGAGCTGATAAAGATA 1478 32 100.0 35 ................................ AGCAGATCACCACGTACCTGCAGACGCTGTTCGAG 1411 32 100.0 33 ................................ CTCCGCCAGCTGTACCAAAAAATTTGCAAGCTG 1346 32 100.0 33 ................................ CTTTTTGACCTCATGTTTCTCACCTCCTTATAT 1281 32 100.0 33 ................................ GTATTGAGGACTGGTTTTCCTTACGCCTAGTCT 1216 32 100.0 33 ................................ CCGGAGCCGACTAGCTTTGACAAAGCCAAAATG 1151 32 100.0 35 ................................ ACTGTCGAAGGCACGAATGCATATTTACCGTCGCT 1084 32 100.0 35 ................................ TCCACGATACGGATATCGCTATAGTCGCAATCAAG 1017 32 100.0 34 ................................ ATGGATGTCGAGGCGACCGTCGAGGACACGATCG 951 32 100.0 33 ................................ CTACCAAATTTTTGTGTTTATCACCGTCCTTTA 886 32 100.0 34 ................................ GCTCTCCACACTCGAAGCAATGATAAGGAGGCTT 820 32 100.0 33 ................................ ACCTTTGTCGACGTCTTTGTCGCTGTCGTAAAC 755 32 100.0 33 ................................ TCCGATGGATCAATGTAAGCTACACTTGCGCCT 690 32 100.0 34 ................................ ATCTAATATTTCATTTATTATCACATCGCTCAAA 624 32 100.0 33 ................................ TTATCGAGTTGCATCCCTGTTATCCTCCCTTAG 559 32 100.0 33 ................................ ATAACCCCGAACCCAACGAAAACATTGTCTGTT 494 32 100.0 34 ................................ ACGCAGCCAGCTCATTTCATCGCGCAATTTAAAC 428 32 100.0 33 ................................ GCTTTAATCTTGGCATCGGGCAGGCGCCGTTTA 363 32 100.0 33 ................................ AGCGGAACATTACTCGTATAGACGGTCGGCAGC 298 32 100.0 34 ................................ CAGCCTGCCCCTACCGCGATTACCCGGCTCAGCA 232 32 100.0 33 ................................ TCGCGTCCTCTGTGGCGCGAGTTGCCGCACCGG 167 32 96.9 33 ..........A..................... ATGGCGGAGTGGAGGTCGAGGAGGATATCGGAG 102 32 100.0 33 ................................ GCCTCAGCTTTGGTAAGAAACATGGTGTTCTCG 37 32 90.6 0 ..........AC..G................. | ========== ====== ====== ====== ================================ =================================== ================== 25 32 99.5 34 GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAC # Left flank : TCGTAGTTGAGCGAGACAAGCAGCATCACCGCTGTCGCTCCTCGTGCGGGAGCGTGGATTGAAACCTTATCCCACCCTAACGTATATATAGACCATTGGTCGCTCCTCGTGCGGGAGCGTGGATTGAAACATCCGCAAGATGTCGCAAGCGAGCTTATCAATTTGTCGCTCCTCGTGCGTGAGCGTGGATTGAACCCCTGTCCCCGATCAGGAATGGCAGCTAGGGGTTGTCGCTTCTCACGCGGGAGCATGAATTGGAACCTTGCCTAAAGCTGATGTTAGTCCGAGGTATGAGACGCTACTTATTAAAATAGCATAATCTCTTCCAGCCAGCGCGAACCTCAGGCTCACATGAAAACCCTGGGAGGTTCGCAACCCGCGCTCTGACTGGTTTTGTTGAATAAAAGGCTCCATTATATTAAAAATTATGCTACACTTAAAAGAGGTTCGCGATTTTGCGCCTCGCAGCCCAGGCTGCGTAAGGCCTTGCGCGTGCCGCA # Right flank : CATCTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2533-1849 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000024.1 Paenibacillus sp. 598K contig_0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2532 32 100.0 33 ................................ CTCGGGGCCTTATCTCTCAACCCCTGCCTCTAT 2467 32 100.0 35 ................................ GGTTGGAAGATCAGGTGACCTGCTTCGTCCGTCGG 2400 32 100.0 34 ................................ GCTGTACTCGGCCGCCAATCGCATGAAGTTGTTA 2334 32 100.0 33 ................................ TTTGACCTCGCGTTTGGACAGATCCTCGCTATC 2269 32 100.0 32 ................................ GCTTTTCCCCGTCTTAGGATCCTTCTCCCAAA 2205 32 100.0 32 ................................ TTGATGTGCTTATAGAGCTTGGCGACCTCAAT 2141 32 100.0 33 ................................ TCGTAGTTGAGCGAGACAAGCAGCATCACCGCT 2076 32 100.0 33 ................................ CTTATCCCACCCTAACGTATATATAGACCATTG 2011 32 100.0 34 ................................ ATCCGCAAGATGTCGCAAGCGAGCTTATCAATTT 1945 32 93.8 33 ...............T..............C. CCTGTCCCCGATCAGGAATGGCAGCTAGGGGTT 1880 32 81.2 0 ......T...AC........A..A....G... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 97.7 33 GTCGCTCCTCGTGCGGGAGCGTGGATTGAAAC # Left flank : AGCTGCAAATCAAGCCGAAGAGAATCATTGAACCGGAGACGGATAGCTTGCGCTTCTATCGTCTGGGAGCCAATTGGAAGGGGAAGGTCGAGCATGTGGGAGCCAAACAAGGATACGACCCAGAGGGATTCCTGATGCTATAACGACGGAGTGGACGTTTGCGAGCCTCATTGAAAGGCTGGGGTTCGCAAACGTTTGTGTGTATTGGCTCCTGGTGAGGTCAAGATATAGCTACGGTCAATGGATTTCATGGCAACCGTCAGGGGCATCCAGCCGGATGAGGAAGAGGGGGGAGCTCGAAGAATATCATGGTTCGCTGGTCTCCCGGGTTGGCGCGAACCTAAGGCTCACATGAAATCCCTGGGAGGTTCGCAACCCGCGCCCTGACTGGGTTTGTTGAAGAAAATCCCCAATAAATAATAAATATATGCTACACTCAAAACAGGTTCGCGATTTTGCGCCTCGCAGCCCATGCTGCGCAAGGCCTCGCGAGTGCCGCA # Right flank : CTTGCCTAAAGCTGATGTTAGTCCGAGGTATGAGACGCTACTTATTAAAATAGCATAATCTCTTCCAGCCAGCGCGAACCTCAGGCTCACATGAAAACCCTGGGAGGTTCGCAACCCGCGCTCTGACTGGTTTTGTTGAATAAAAGGCTCCATTATATTAAAAATTATGCTACACTTAAAAGAGGTTCGCGATTTTGCGCCTCGCAGCCCAGGCTGCGTAAGGCCTTGCGCGTGCCGCAGTCGCTCCTCGTGCAGGAGCGTGGATTGAAACGCACGCGCGCCTCCAGCGTCTTAGCCGGTATGCGTCGCTCCTCGTGCAGGAGCGTGGATTGAAACTTTCTAAGTATATCACAAGGAGCTGATAAAGATAGTCGCTCCTCGTGCAGGAGCGTGGATTGAAACAGCAGATCACCACGTACCTGCAGACGCTGTTCGAGGTCGCTCCTCGTGCAGGAGCGTGGATTGAAACCTCCGCCAGCTGTACCAAAAAATTTGCAAGC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 11685-10873 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000024.1 Paenibacillus sp. 598K contig_0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 11684 32 100.0 34 ................................ CGCCTGTGAATCGTGGGCCAGCCGCTGATTCAGG 11618 32 100.0 34 ................................ TCGATCTGCAATATTTCTTTCGCTGTTTTGTCAG 11552 32 100.0 33 ................................ CCAGGGAGAATTTAGCGCCATTACGGATTGCGG 11487 32 100.0 34 ................................ GATATAGGCGATAAAATCAGCGATAGCCATTTTG 11421 32 96.9 33 .......T........................ TTTAGTGAGCTTTCGAGTTCCCGTCTGCGCTGG 11356 32 100.0 32 ................................ TCAGCTCGCTGCCGCTGTTCCTCCTGCACCTC 11292 32 96.9 34 T............................... CAATCTGGAATACCCGGGGTCTGACTGATGTAAT 11226 32 100.0 35 ................................ GTCACCTGTCCTATTGTCGATGCTGACCCCAATAA 11159 32 100.0 33 ................................ GAATAGCAGCTACATCAGTTAATGTGCCTGACA 11094 32 100.0 34 ................................ TGGAAGAGCAGCCAGAGGAAATCCATGATTGCCC 11028 32 100.0 32 ................................ AGGCCATAGACGTTAAATGTACCTGCACCGAT 10964 32 93.8 28 ......T.....G................... GAGACGTTCCGTTACCCGTCGCCCAACC 10904 32 75.0 0 ..........ACG........ATT..C....T | ========== ====== ====== ====== ================================ =================================== ================== 13 32 97.1 33 GTCGCTCCTCGTACAGGAGCGTGGATTGAAAC # Left flank : AATCCGCATTTCGACATGACGTTCGGGTCGCTCCTCGCGTAGGAGCGTGGATTGAAACCGGAATTTGAGGAGGTGCCCGTATGCCCGGAAGAGTCGCTCCTCGCGTAGGAGCGTGGATTGAAACTATTCGGACGTCGCCCAGGGGACAGCGCCGCTAAGTCGCTCCTCGTGCGGAAGCGTGGATTGAAACCGAACGCGAGAAACTGAGGAAGCAGATCAAGCGGACGCTCCTCGTTCGAGAGCATGGATTCAATGAGCAAGCGATGGGGAGGTTAACGACGCGGTCTGGTGTTCGTCATTTCTCACACAGGAGAATAACCCCTTACTTGCGAGCGCGAACCTCAGGCTCACATGAAAACCCTGGGAGGTTCGCAACCCGCGCCCTGACTGGTTTTGTTGAATAAAAGGCTCCATTATATTAAAAATTATGCTACACTAAAAAGAGGTTCGCGATTTTGCGCCTCGCAGCCCAGGCTGCATAAGGCCTTGCGCGTGCCGCA # Right flank : GCCCGTGCTCTTGATCTCCCCAATTGCCTGCCCAAGTCGCTCCTCCCGCAGACATTCCTCTATTGTTTCTACAAAATTCCCCAAATGAAGATAAATTCATCAAAAATGAATGTCGTTGAAGGAATATAGCTAAGTCTGTAGAATTAGTTTCTGGATACCTATTATGGGTCTGGGGTCTTGATTCTCGGCCCGGTTTGATTCGATAGGAGGAGATAGATGGCATTTTATGCGCACAGTAGGGATGATGGGGAATATCAACTTCTGTATGACCATTTATTTAATGTTGCCCGGCGGAGCGAGTCGTTTGCACGTGCCTTTGGCGCTAGCGAGCTTGGTTATTTGGCAGGCTTGCTGCATGATGTCGGAAAGTATTCAGCCTTGTTCCAGCAAAGAGTACAGGGGAAAAATGTACGTGTCGATCATTCGACTGCCGGGGCAAAGTGGGTGCTGGAAAAAACGTCCCGTCAGCAATGTATCGGAACGAGCGGCGCAGCCTTATA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTACAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 4 12223-11930 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000024.1 Paenibacillus sp. 598K contig_0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 12222 32 100.0 32 ................................ GTAGACAATCCGCATTTCGACATGACGTTCGG 12158 32 100.0 34 ................................ CGGAATTTGAGGAGGTGCCCGTATGCCCGGAAGA 12092 32 100.0 34 ................................ TATTCGGACGTCGCCCAGGGGACAGCGCCGCTAA 12026 32 87.5 33 ...........T.CG.A............... CGAACGCGAGAAACTGAGGAAGCAGATCAAGCG 11961 31 75.0 0 .A.........T-.C.....A......C..TG | A [11944] ========== ====== ====== ====== ================================ ================================== ================== 5 32 92.5 34 GTCGCTCCTCGCGTAGGAGCGTGGATTGAAAC # Left flank : CCGGCACCTGAGATGGCGGTTCTTGGCGCATAGCTTGCTGCCTCACCGCTTGTCGTCCTAAATGATGCTGCAGGCAGTCGTGTCGTTGGTATGACAGCCGATGCACCTGGTGAATCGGAGGATGAATTGCCCCTCGGCTGCGATATTGCTCTCTGATGCGCACCAGAGCGATAATTCACACGAATCACAACCTTTTATTGATTTGATATACGGCATTCGCCGTGTCTTCTTAGTACCACTCTATGTCGTAGGCGAACATAAGGATTGGACGTTAGCCCGGGTAAGGGCAACAATCTTCTCGGGTGGCTCCCTGTTATGCCAGGCTCCGGCTGGCGCGAACCTCAGGCTCACATGAAATCCCTGGGAGGTTCGCAACCCGCGCGCTGACTGGATTTGTTGAGGAAAAGTGTTCATTATAATTAAAATTATGCTACACTAAAAATAGGTTCGCGATTTTGTGCCTCGCAGCCCAGGCTGCGTAAGGGTTCGCGAGTGCTGCT # Right flank : AGCAAGCGATGGGGAGGTTAACGACGCGGTCTGGTGTTCGTCATTTCTCACACAGGAGAATAACCCCTTACTTGCGAGCGCGAACCTCAGGCTCACATGAAAACCCTGGGAGGTTCGCAACCCGCGCCCTGACTGGTTTTGTTGAATAAAAGGCTCCATTATATTAAAAATTATGCTACACTAAAAAGAGGTTCGCGATTTTGCGCCTCGCAGCCCAGGCTGCATAAGGCCTTGCGCGTGCCGCAGTCGCTCCTCGTACAGGAGCGTGGATTGAAACCGCCTGTGAATCGTGGGCCAGCCGCTGATTCAGGGTCGCTCCTCGTACAGGAGCGTGGATTGAAACTCGATCTGCAATATTTCTTTCGCTGTTTTGTCAGGTCGCTCCTCGTACAGGAGCGTGGATTGAAACCCAGGGAGAATTTAGCGCCATTACGGATTGCGGGTCGCTCCTCGTACAGGAGCGTGGATTGAAACGATATAGGCGATAAAATCAGCGATAG # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGCGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 5 14097-13668 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000024.1 Paenibacillus sp. 598K contig_0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 14096 32 100.0 33 ................................ ACGATAATCCTGATTTACTGGAGTCGAGCGAGT 14031 32 100.0 33 ................................ CTCCCACAAGATCCTGAATACAAGGAATTGTTT 13966 32 100.0 34 ................................ ACGGATTCGGGATTCCGCCAGGTCATCGACGGCG 13900 32 100.0 33 ................................ GGCAATGCCACGATCTTATAACCAGTGTTATTT 13835 32 100.0 37 ................................ GGCGTCGGCGGGACAGGAAAGATTAAGCTGGGCACCA 13766 32 100.0 36 ................................ GAAGAAGCGTTAGCACGGTTTTTGCACGAGCAGCGC 13698 31 93.8 0 ............A-.................. | ========== ====== ====== ====== ================================ ===================================== ================== 7 32 99.1 34 GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAC # Left flank : GATCACGATCCCGATCTCCGCCCTGATGGCGATTATTTTCTTCAAGCTGATCGAGTGGATCTGGCTGTAATATAGTAGCAAGAGAAACAAGGCTCGTCCGACTGCGCATGATGTGCGATGGGACGGGCCTTGTTGTCGTGGGCTGCCGCTAGCGAATAATTTGCCCCTCGGCTGCAATATTTCGCTCTGGTGCACCAGAGCGATAATATACACGGATCACAACCTAATATTGATTTGGTATACGGCATTCGCCGTGTAGGCGAACATAAGGATTGGACGTTAGCCCGGGTGGGGCAACAAACTTCTCGTATGGCTCCCTGTTGTACCAGGCTGGCGCGAACCTCAGGCTCACATGAAATCCCTGGGAGGTTGCAACCCGCGCCCTGACTGGATTTGTTGAGTGAAGGTCGCCATTATAATATAAAATATGCTACACTAAAAACAGGTTCGCGATTTTGTGCCTCGCAGCCCAGGCTGCGTAAGGCCTCTCGAGGGCCGCT # Right flank : ACCCGCACGACAGGACAAGTAAGCTACTCGAAAATCTCCATCTGGACAACACACTTTTTTTGAGAATTCGCGACAATTATCTGGACAAATACCGATGTGGGAATAGCAAGGTTCTCCCATGCACAGGGTTGGCGAGGGTGCAATCGAGGCGGGGACTAGACTTTACTCTGCTGAGACGAGCGTCGGACCAGTTAGCTCCCGTCTACAAAGTGACGTGAGCTACTGGTCCTAAGGTGCGGCCTGGATCGTTTAGCCATGTGTCAGAATTGGGGCTGTTGTTGGCTGCGAACCGACTGGAAATAGTAGCCGACACCGAGTCGCAGCCTGCTTCGTTCTAGAGAAGTGAGAAGGGGCAGGTCGAGAGCCTTTACCCTTGTTAGCTCAGCCCGGTTGTGTTAGCGACTGGGCTTGCGCTTTGGACTGGGCCGGGGGCTGCTGCTGGCGGGGCGAGGTCGCGCGCCAGGCTGTGCGCCGCTGCCGGAGCCACTTGGCCGTGCGCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25581-24820 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000080.1 Paenibacillus sp. 598K contig_0080, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 25580 32 100.0 37 ................................ AGCTCTTGCCGAATCGCGTCAAGCTCACCCACGCCGA 25511 32 100.0 33 ................................ ATACGCCGCGCCGGCATAGACGCGCATGCCCTC 25446 32 100.0 35 ................................ CCAAATGGAGAGAATAACGCCCACCTCATCGCCAA 25379 32 100.0 33 ................................ CTCAATAACGCGGACCTCCATAGCGGAGGCCAG 25314 32 100.0 34 ................................ CTATAAGGGTAGTGCTGACATACACCCAGCGGGC 25248 32 100.0 33 ................................ AATCATGAGATTGTCGATCATATCGACCCTGAA 25183 32 100.0 36 ................................ GTACACAAACCGGAGATTCCGGAGGAGCTACGAAAG 25115 32 100.0 34 ................................ ATTACAGGCATGATACCCTTAGCTGCTCCGTTAA 25049 32 100.0 35 ................................ AGATCAGCCTCGCCAAGTTTGATTTCAGCTTCCTG 24982 32 96.9 34 ..........C..................... AAGGCTGCGCTGTACGAGCGCTCACTCCGGGATT 24916 32 96.9 34 ..........A..................... TAATGAAGCTATACCGCTCCCCATTTGCCGCCCG 24850 31 78.1 0 ...A...-..AC.........CA...C..... | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 97.7 34 GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAC # Left flank : CGGAGGGGGCGGTGACGATGTCGCCCCCGTGTCAGGCGGCGAGGCCGGCCCCGTCCCTGTCGGCTCCTCGGCGTTGTTTCCGCAACCGGCCAGCAGCATTCCGGCTAGCAGTACGGCTAGCAGCTGTTTTTTCATCACTGATCACCCTCTTGTCAGTATTGATGCCATCGTTGGCAGCTTATAACCACTTACCCTCTGAGCGCGGGTGCAATCAACCGGGCTTTTAATTGTAGCTAGAGATCGCCCACAATCTGTCTTTGAATTGGAACAAAAGTTCGTATTACAATGGAGTAGCTAACCAGGAGGGGATACTGTGGTATCAGTTGGTATCAGTGCGAACCTGAAGCTCAGATGAAATCCCTGGGAGGTTCGCACCCCGCGTCCTGACTGGATTTGTTGAGTAAAAACCCCCATTATATTAAATAATATGCTACACTAAAAATAGGTTCGCGATTTTGCGCCCCGCAGCCCAAGCTGCGTAAGGCTTTGCATGTGCCGCT # Right flank : TTCCATGGCCATGTCCTGCTGCCGGAGATGCAGGATGCGCGGCGAGGAGTCGCCAGGGAAGAGCAGCCGCAGGACTTTCGCGCCTCAGCCCCGCACAAATAAAGGTGTCCCCAAGTCATCCAAGATGACCAGGGACACCCTTTTCAAGCGCGAGGCTGGAGAGCATAGCATATTCGCGAATAATTAGAAGTTGTTATAGATCCGCTCTGCCGTCACTTTGCCGCTCGACACGTCCTCCGAGGTGAAGCCCGCGACGGTGTTGCCGACCTTAAAGTCGTCGCTCACCAGCTGCTCGGACACCGGCGGCGCTGTCGGCCCGGTGATGCCGTATTCGGTCGCATCGTTAACCGTCACCCACAGCTCGCCGACCCGGAAGCTCAGCCCGTCTTCGCTCACTTCCTCGATGACGCCCTCGAAGTTGACGACGCGCTTGCCAGCCATCTCGCCTGGCGGCTCGTCGGCAATCGTGCCCGGCTGCTGGTTGGTGCTGCCGCTGTCCA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 27438-27729 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000080.1 Paenibacillus sp. 598K contig_0080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 27438 32 100.0 34 ................................ CTCGCGGTCCGTGGCGGCCCTATAGTCGGCGGAC 27504 32 100.0 32 ................................ TTGACCGCTCGCCGTAAAGCAATTATGGACGG 27568 32 90.6 33 ....A.......G..C................ GGTGAGATTAACTGGATGGGCGTCATTACGACT 27633 32 93.8 33 ............GG.................. ATTCAATTACTCCATCGATCTCCTCCTAGGCTC 27698 32 93.8 0 .........T..G................... | ========== ====== ====== ====== ================================ ================================== ================== 5 32 95.6 33 GTCGCTCCTCGTACAGGAGCGTGGATTGAAAC # Left flank : TTCTGCTTCAAGTCGTCCGTCGCCAGCACGGACGGCTTGTTTGGTTTGGTCTCCTGATTCGTCGCCAGCCAGAACAGTCCGAGCGCAAGCACAGCGAAGCCGAGTACGATAAAACCTTTCAAGCGCATAAAGATCCCGCCCTTTCGCCTAGAATTTAACTATTCAAGGATAGCATGGACATGCGGTCGGCGGATGTGAGAGAGCGCACAAGCGATGATGGGTCTCAGGGTCGATGGCGGCCGCGTCGGGATAAGTTTATGGTCATCAGCCGGTTTTTCGTCATCGGACGCTCCCCATGTGAGAGCCTATATTAAAATTCTCCTGCTGGTCAGCGCGAACCGGAGGCTCACATGAGATCCACCGGGAGGTTCGCACCCCGCGTCCTGACTGGGGTTGTTGAGTGAAAAGCCCCATTATAATAAAAAATATGCTACACTAAAAATAGGTTCGCGATTTTACGCCTCGCAGCCCAGGATGCGCAAGGCTTTACGCGTGCCGCA # Right flank : CTTTTTTGATAATTCATTCATTTAGCGCCACTTGCTTCGCTACTCGTTGATGTAGTTCTCCATCGCACAGCGTTGGTTGTAGAATCGCCATACGTCGATGGCTTCCCAGGCTTCAGTCGTTACCATAAACGCAGCAGATCTTTATTTAACAACGTGTGATGTGGCACTCGACCACCCATCGCGTGGGCGACCAAGGCGCCGCTCTCCAGGGATTTGATGTGAAAGAGACGTTCACAGTCCAGAAGCCAGCCGATGATGAGATACTGCAAGATCATGAGTGGGGAAGATGGCGTCCACGGCTTTAGCTTGACCCAGCGTCTGAAGTGTCTGATGGAACCGAATCGATTCCAGGTAACTAAGGATGGTTTTATTGCCTGCAAAATTCGTGGCATTTCGCATGGAAAATTACGTTTTCAACTCCCTCTAAACACTAGCTTAGCCTAGTGAGATCGCGGCCGTTATTACATTTTTTTGTGTTGAACTGTGCTAGTTATATCACA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTACAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 30370-31525 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBX01000080.1 Paenibacillus sp. 598K contig_0080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 30370 32 100.0 34 ................................ GATTACCTTGGCTATGGCTAAGATTGTCGAAAAA 30436 32 100.0 35 ................................ CACCATGACCAGAGTGTCAGCATCGAGCCGGTGCA 30503 32 100.0 35 ................................ TCCAACTGTGCTAGCACATAATCATAGGCGACCTT 30570 32 100.0 34 ................................ GCTACTGTGCCGCCAGCTGGTGAACGTGATGGTT 30636 32 100.0 36 ................................ GTCCGATCAACCCGGCCATACCTACCGTCACGGGGA 30704 32 100.0 35 ................................ CTGTATACTTTTAGGCTTTTGCCGCTCTTTTGGCG 30771 32 100.0 34 ................................ ATCAATGACACGAAGCCGTCCGGACTGGGCCAAG 30837 32 100.0 33 ................................ CCCGGGTGCCAGCGTGCCGGTGATGGCGATCTG 30902 32 100.0 34 ................................ CTTGTACTGCCTGTAACTGACGACTGAAGACCAA 30968 32 100.0 34 ................................ TTACTTACTTAGAAGTAATCTATTTCATGTCCCG 31034 32 100.0 34 ................................ CGGTGGATTTTTCTTGACAGATTTTAACGGGTGT 31100 32 100.0 34 ................................ TTACTTACGACGACGGCCGCATCCAGACGTACAC 31166 32 100.0 34 ................................ AGCGTTTCTACCGCAGACTGGGGGCTCATATCGC 31232 32 100.0 33 ................................ AGCTCGGCACGCTTTGGCGGTTTCAACTCGCGG 31297 32 100.0 33 ................................ TTACGTATCCTGACGCTAATATTACCGATCCTG 31362 32 93.8 33 ..........AC.................... CGACGAGATACCGAAGTTTTCGACCATCGGTTT 31427 32 93.8 35 ..........AC.................... TTGATTCCGAAATGTAAAGCTGGGCGGTCTCAAAT 31494 32 71.9 0 ...........C......T.T.AA..A.CTT. | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 97.8 34 GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAC # Left flank : TGTATGATTTAGCCAAAATGACATGGGTGGACTTTGGAGTTGAAGAGCGACCATTCATAGATGCATTTGTGGAAGGGTGGGAAAGACAAACCAAGGTTAAAGTTGATTTAGCTCTACTCACATTTTATCAATTGGTCTATTGTTTAGCTTCAATATCTTGGGTAGATAAGCTTCCAAACCCGAATGATGACAATTTATTGTTTCGTAATAAGGCGCGCAGTACAATGAAGTATTTATTCAATAAAAGTAGATGCAATAAAATGACATGTAGTCATGAGTCATGACACTCTTCGTTCCTCATATCAGAGCCTATATAGATCGCCTACTTGCCAGCGCGAACCTGAGGCTCACATGAAAACCCTGGGAGGTTCGCACCCCGCGCCCTGACTGGTTTTGTTAAGTAAAAGCCCCCATTAAAATTAAAATTATGCTACACTAAAAATAGGTTCGCGATTTTGGGCCTCGCAGCCCAGGCTGCGCAAGGCCTTGCGTGTGCCGCT # Right flank : CTTAAAGACCCTAAGCGGCCTCAGTGCACCTTTCTTCCCTTGACGACGCAATTCGGCGCTCACCGTCAGCTCCAGTGCACCTTTTTTCCCTTGCAGGCGCGATCCAATGCTACCCGGCCGTCTCATCAGTCTATAAGCCCCTCCCCAAACAACAACAGCCCGCACATCTCCATGTGCGGGCTGTTACTTGTCGGCGACCCAACAAGGCCGCCCCAATGCTCTAAGATAATTGCGCAAACTCGAACGTCAGCCCGGTGCGGGCTTCCGAGAACTGCCAGAGCCGGGCGGCGAGTTCGGCATTCTGGGCGAGCTGGGTCGGCGTCTCGAGGACCGGGTAGCCCTTCATCCGCATCGCGCCGCCGGGGCCGAGATACTCGCCGCCCCGCAGCTGCGAATCGGTCGCAGCGCGCACCGTCGGCAGGGCGCCCATATGGGCATCCTGGCCGAACAGTCGGAAGAACAGCTTGACCGGACCGGAGGTGCGGTCGAGATCGGTACGG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //