Array 1 34631-33743 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKXZ01000031.1 Pseudomonas aeruginosa strain Pae111 NODE_31_length_68808_cov_16.4433, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 34630 30 100.0 36 .............................. ACAAGTAGCGGCTCGTCGGTAGCCCAGTTCCCGCGT 34564 30 100.0 36 .............................. GCGCGATCGTCGCTGCGCTAGGCTGGTCTCGAAGGT 34498 30 100.0 35 .............................. TCCGTCAAGGAGCGATGGGTAGATTTCGATCACGT 34433 30 100.0 37 .............................. TGTGACTAAGTGGCTGCTCGTTGCAGTGGGTGTGCGT 34366 30 100.0 36 .............................. GCGCTCATGCGTGACAACGTACAGCAGCACAGCAGT 34300 30 100.0 35 .............................. CTTCGCGCTGGACGAGAACAACGCTCCTCTCTAGT 34235 30 100.0 36 .............................. CCTGGAGAGGCCAGCAGGCCGACATGATGATCGTGT 34169 30 100.0 36 .............................. ACCTGCTCGAGTTCGGCCTGGTGACTCTGACGTGGT 34103 30 100.0 35 .............................. AGCAACTATCGCAAGGCCCTGCCGCTGCAAGACGT 34038 30 100.0 36 .............................. TTGAAGCTCTACGGATCCTTCGGCCTCGAGAACAGT 33972 30 100.0 37 .............................. ACGAACACGGTTATCACCGGCGACGGTAACAGCGTGT 33905 30 96.7 38 ...............T.............. AGCCCCGGCCAGGTCGTAATGACCGCAGCCGGTGAGGT 33837 30 90.0 35 ...........T................CA ACTGCCGTTGTCGCGTGACGGCTATCAGGGAATGT 33772 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 97.9 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGTCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTAGATAGCGCGCAGTGGACACTCCTTAAGCATCGTCTGTGCGACCTAATCAATCCGGAACAAGACAGCCTACGTTTCTACTACTTGGGCACGAACTGGCAACATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTAAATGGCCCGCTGATTCTTTAGCGTCGGCGCGAACCTAAAGCGACCGACCCAACCCTGAGGGGTTCGCAGCTCTCTAGCTGATTGATTTATCTACTCTTTTTTTGACGTTAGCAGTTTGATGGCGCGCGCCTTGCCTAAATAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAGTAAGTTATAAGTGGGCGGT # Right flank : ATGGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCTCAGAGCCTGGCCAGGAACTCTTGTGTCACAGTGTCGCGGCCCCAAGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGAGCGGTGAAGCCCCTCGGGGTGTGGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCTCTTGGCCGATCAGGAAGACCTGGCAGAGGTACTGATTGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 388-1735 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKXZ01000014.1 Pseudomonas aeruginosa strain Pae111 NODE_14_length_164379_cov_12.6895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 388 28 100.0 32 ............................ TGGCTGACGAAGCCCCAGGCCGCCTTCCCGCC 448 28 100.0 32 ............................ TTCTGGATACAGGTCGGACCGAACACGTTGTG 508 28 100.0 32 ............................ TTATCGGTCGGCAGCTTACGCAGGTCGCAGGA 568 28 100.0 32 ............................ ACGTATCCCGACCTGTTCGCCAAGCTCGATGT 628 28 100.0 32 ............................ AATCGGGGCTTTCTTGATATCCGTCCAAGCCT 688 28 100.0 32 ............................ TTGTTGTACAGCACCTGGTCCATCAGCGCGCT 748 28 100.0 32 ............................ ACCGCCACGCCGCAGCAGATCATCGACTTCTT 808 28 100.0 32 ............................ TTGAGTTTCTCTACGAAGTCGGGGGATTCATC 868 28 100.0 32 ............................ CGCAATCGACCCGCCCCGATCGCAAGTTTGCC 928 28 100.0 32 ............................ AGAAACATCGCGCACGTCTTCGCCAGATCGGT 988 28 100.0 32 ............................ ACATAGGCCAGCTCTGGCGATTCATCGCCAAA 1048 28 100.0 32 ............................ ATTGATCACGGCGAACGTGCCGGGCAGGAGTG 1108 28 100.0 32 ............................ TCGTCCATTCGCGTGCGGGCCAGTCCCCGGAA 1168 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 1228 28 100.0 32 ............................ TGGTGCGCAAAGGCTGGAGTCCTGCGCATGAC 1288 28 100.0 32 ............................ TGCAGGCGCTGCGCGCGCAACTGGAGAATGGC 1348 28 100.0 32 ............................ GATGGCGTTGCCCGTGCCGCCTCGGGCCAGGG 1408 28 100.0 32 ............................ TCGATTCCTTTATCGCAGCGCGGCATGCGGAA 1468 28 100.0 32 ............................ GGCAAGGGCTACATGAACGTCACCACGGCAAT 1528 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 1588 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGAGTAG 1648 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 1708 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.8 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGACAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 387-714 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKXZ01000036.1 Pseudomonas aeruginosa strain Pae111 NODE_36_length_48575_cov_10.7629, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 387 28 100.0 32 ............................ TGAAGGCCAAGGGCATCGACCTGGCGCTGTTC 447 28 96.4 32 .......T.................... TATCAGAAGGCCAAGAAGATGTTCGTGAAATA 507 28 100.0 32 ............................ AATCATCAGAGCAGGATGTTCTACGACTACCT 567 28 100.0 32 ............................ CAGTTGCAAGCCGTCTTCGGTCTCTGGTGAGG 627 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 687 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCTACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11008-9242 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKXZ01000036.1 Pseudomonas aeruginosa strain Pae111 NODE_36_length_48575_cov_10.7629, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11007 28 100.0 32 ............................ AAGAAAATCAGCGCTGATATCAGGGCCGGCGC 10947 28 100.0 32 ............................ TGAGTGACAACGCCCAGGACGGCAGCCGATAC 10887 28 100.0 32 ............................ ATGCTCAGCATGACCAGTTCGGTGGCGTCCTT 10827 28 100.0 32 ............................ TCTTCGCCCGCTCCCACAGCGCCAGGCGCTCC 10767 28 100.0 32 ............................ AAGAAGGAAGTGAAGTCAGTACGCAAGACCCC 10707 28 100.0 32 ............................ ACGCTGGGCCAGGCTCCCGCTTGCATGGCCGT 10647 28 100.0 32 ............................ AGTGTCGATGATGCGAGTGCGACCGTTCACGG 10587 28 100.0 32 ............................ TGACAGAGGGCAAGACTTGGAGCCTGCACGAC 10527 28 100.0 32 ............................ AAGCATTCTGCAAGGCTTATGGGGATGCGCTG 10467 28 100.0 32 ............................ AGCAGCGCGCCGCCATCGCTCAGGCGATCCAG 10407 28 100.0 32 ............................ TGCTCGCGGATGATGCGGCCAGGACTGGTCAG 10347 28 100.0 32 ............................ TATGAGCGTGACAAGGACCAGGCCGAGCACAT 10287 28 100.0 32 ............................ TTCGATACGCCAACGCGGTTCGCCAGATCTGA 10227 28 100.0 32 ............................ TGGTACGTGAGCGAACCGCCGGTGAGCAGTGT 10167 28 100.0 32 ............................ AACTGCGGCCGGTAGTGCCGCGCTCCGATCCA 10107 28 100.0 32 ............................ AAGGAGCACCACGACATGGTCAGAGCAAACCC 10047 28 100.0 32 ............................ GCCGAGTTCCGCTATCTCCAGCGCCTGGCCGA 9987 28 100.0 32 ............................ CTGGATGACTGCATCGCGGTCTACAACCAAAT 9927 28 100.0 32 ............................ GCGACGAGATCGAGGACGGCGACACTACCCTA 9867 28 100.0 32 ............................ TTTTCGGCGTAGTCCCACTGCTCGTCTTCATC 9807 28 100.0 32 ............................ TTCAGCGCGCCTTCCTTCCACTCGGTGAGGCG 9747 28 100.0 32 ............................ AACACCGGGACGGGAGTCCGATCCTATGCGCG 9687 28 100.0 32 ............................ AGCAGCTTCTGCGTATCGGTGCGGGCGACGCC 9627 28 100.0 32 ............................ ATTCTCATCGCCAGGCATGGAGAAAGTGCATG 9567 28 100.0 32 ............................ ACCCAGTGAAATCAGTCCCCGCGCTCGTATCG 9507 28 100.0 32 ............................ TGATAACCATGCTCAAACCACGCCTGGGCGCT 9447 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGATCCAAATCCTAC 9387 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 9328 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 9269 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTTGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //