Array 1 44905-45237 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRM01000002.1 Salmonella enterica subsp. enterica serovar Poona strain BCW_3976 NODE_2_length_373974_cov_2.34932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44905 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 44966 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 45027 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 45088 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 45149 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 45210 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61382-63114 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRM01000002.1 Salmonella enterica subsp. enterica serovar Poona strain BCW_3976 NODE_2_length_373974_cov_2.34932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61382 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 61443 29 96.6 32 ................T............ GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 61504 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 61565 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 61626 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 61687 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 61748 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 61809 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 61870 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 61931 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 61992 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 62053 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 62114 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 62175 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 62236 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 62297 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 62358 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 62419 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 62480 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 62541 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 62602 29 100.0 25 ............................. GTACAGAAAAAAGAGGCGTCGCATG Deletion [62656] 62656 29 75.9 32 AC.C..T...AT.T............... ATAATCAGGTCGTTAATATTTTTTGTCTGCGC T [62660] 62718 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 62779 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 62841 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 62902 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 62963 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 63024 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 63085 29 96.6 0 ............T................ | A [63112] ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //