Array 1 55738-55203 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL882693.1 Bacteroides fluxus YIT 12057 Scfld385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ======================================================== ================== 55737 47 100.0 30 ............................................... TCGATATGCCGAGCGAACAAAACCCCGGCG 55660 47 100.0 30 ............................................... ATTACATTGTCCGAGGTCGCCGGGCGTGTG 55583 47 100.0 30 ............................................... TCCTTCTTAAGTCCAAACGGACAGGAGATT 55506 47 100.0 56 ............................................... TTGTCCGTCTGCTCCCCTCTCCATTGCACTGTTGTGATTTGCTTTCATTTTAGTAT 55403 47 72.3 30 C..TGNNNNNNNNNN................................ TAACGTTATTTGCGGGCAATTTGCCCCGTA 55326 47 100.0 30 ............................................... CGCAACATGGCAAATCGGAGGGGTCAAGCC 55249 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ======================================================== ================== 7 47 96.0 34 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGT # Left flank : CTTTCATTTTAGTATCTTTGANNNNNNNNNNTGTTCACTCCATAACCAAATAACGGTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGTGTTTAATTCTAATCCGTCGTCCGTGAACGGTTGTGATTTGCTTTCATTTTAGTATCTTTNNNNNNNNNNGATAATGCCAAAGAACACTTTCGTACTGTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGTCTTGGTTCCCTTGATTGGCAACCAATTGTTGTTGTGATTTGCTTTCATTTTAGTATCTTTGNNNNNNNNNNNNNNNNGATACTTCAATACGTTTGAGTTGGGCGGTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGTCGTCCATCCATTCAAATTGGTAACGTTCGGGTTGTGATTTGCTTTCATTTTAGTATCTTTGAANNNNNNNNNNNNNNNNACGTTACGAGTACGGAGGCATTCAA # Right flank : AGAGTATATATAATTATTTGATATGCAAATATTTATATTAAGTATTAGAATCTAAAAAAGGATGCCGTTTTCCAAGAAAAAATCCCGCTATCATGCGGGATTTTCTTTTAAAACAGCTCCAATTGTTGTCCGGGAGTGTTCACATCTACTGTCTTTTTGCCATAGAAAAGCTCTATATTTCCAAATTGCTTGTCCGTAATGCACATAATTCCAACATTTCCATGCTCCGGCAAGAAGGATTTAACTCTTTTTATATGTACCTCTGCATTCTCACTACTTGCACAATGACGAACATATATAGAGAACTGGAACATGGTAAATCCATCCCTTTGCAGATTTTTTTTAAAGTCCGCATACGCCTTTTTATCCTTCTTTGTTTCGGTAGGCAAATCAAACAACACTAGCACCCACATAATGCGATATTCACTAAACCGGTCCATTACATCTCCGGATAAAATATTTTGCGCAATTCACCGCTGAAACATTTATATAGAGAAGCT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 55842-56552 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL882693.1 Bacteroides fluxus YIT 12057 Scfld385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 55842 47 100.0 27 ............................................... CGCCCAACTCAAACGTATTGAAGTATC 55916 47 66.0 30 NNNNNNNNNNNNNNNN............................... AACAATTGGTTGCCAATCAAGGGAACCAAG 55993 47 100.0 21 ............................................... AGTACGAAAGTGTTCTTTGGC Deletion [56061] 56061 46 70.2 29 .T.A.CNNNNNNNNNN-.............................. CGTTCACGGACGACGGATTAGAATTAAAC 56136 47 100.0 19 ............................................... CGTTATTTGGTTATGGAGT Deletion [56202] 56202 47 68.1 30 GAACANNNNNNNNNN................................ TTTATTTGGGATGAAAGATTAAGAGAATGG 56279 47 100.0 29 ............................................... CTATCTTTGCGGTGTCAAACAATAAGNNN 56355 47 63.8 27 NNNNNNNNNNNNNNNNN.............................. AACGGCTATCCGCAGGACAATGGGAAA 56429 47 68.1 30 GNNNNNNNNNNNNNN................................ CGAACCGATAAGCAAAACCTGTCAGACGGT 56506 47 97.9 0 ..................................G............ | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 83.4 27 ACTGTTTCCAATGGTTCAAAGATACTAAAATGAAAGCAAATCACAAC # Left flank : CCGCAAATAACGTTAACTGTTTCCAATGGTTCAAAGATACTAAAATGNNNNNNNNNNCAAAGATACTAAAATGAAAGCAAATCACAACAGTGCAATGGAGAGGGGAGCAGACGGACAAACTGTTTCCAATGGTTCAAAGATACTAAAATGAAAGCAAATCACAACAATCTCCTGTCCGTTTGGACTTAAGAAGGAACTGTTTCCAATGGTTCAAAGATACTAAAATGAAAGCAAATCACAACCACACGCCCGGCGACCTCGGACAATGTAATACTGTTTCCAATGGTTCAAAGATACTAAAATGAAAGCAAATCACAACCGCCGGGGTTTTGTTCGCTCGGCATATCGAACTGTTTCCAATGGTTCAAAGATACTAAAATGAAAGCAAATCACAACTTGAATGCCTCCGTACTCGTAACGTNNNNNNNNNNNNNNNNTTCAAAGATACTAAAATGAAAGCAAATCACAACCCGAACGTTACCAATTTGAATGGATGGACG # Right flank : CAAATCCTTCGACGCATCTGTTATTCAGAAACTGAATTCTTTCAATAAAAACCATCTTTTCTGCCGGCTTTCAACCTCCTTAACCTCTCGTTCGGATTGTTTCTGATACCTTCTACCATCAGGACCAAGTCTCTCCATTCCACATAGGATAAGATCTGCTTTCACTGTTATAGGCTGGCAACCGGAACGTACCCTCTTCCAGACGTTTTACATAGAGCGCCATGCCTTCGTCCTCAGCATGAAGAAGCTTCATGGTCGTTCTGCTCCGGTTTATAAAGATAAAAACATCACCGAGCCGGACATCATATCCCATCCAGTCATGAACCACTCCGCAAAGGAGTTGATTTCTTTGCGCATATCCGTCTTGTCGGGACATAGGAAATTGCATCGGAATCATTCAGGCAGAACATGGTCGCATAACTTATGAATGAGTCCTAATAGCAGCTCCGGATTTCCATGACTGTCCGGATGAATCTTGATACCGGATGGAAATTCTATTG # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.17, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGTTTCCAATGGTTCAAAGATACTAAAATGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //