Array 1 23898-24585 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLT01000118.1 Pseudomonas aeruginosa isolate 203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23898 28 100.0 32 ............................ TTGTGGCGCAGCATCCGGCGCGGATGGGACTG 23958 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 24018 28 100.0 32 ............................ GAGTGCCAGCGTCGGATAAGCGCCTGGATCAA 24078 28 100.0 32 ............................ TCGGCATTGCCGAGCGCTTCGATTGATGTGTA 24138 28 100.0 32 ............................ AATCGGAAACGGGGCCGTGATCGTCCGCCATT 24198 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 24258 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 24318 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 24378 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 24438 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 24498 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 24558 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATTGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35060-33111 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLT01000118.1 Pseudomonas aeruginosa isolate 203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35059 28 100.0 32 ............................ TCTGAGGGCACATGAGAGCGCAGTGGTCTTCT 34999 28 100.0 32 ............................ ACGAATGCGAGTGCGACGGCGGATTCCACTAC 34939 28 100.0 32 ............................ ATATGCCGAAGCCGGCAACTTCTTCTGACTCG 34879 28 100.0 32 ............................ TCTGAGGGCACATGAGAGCGCAGTGGTCTTCT 34819 28 100.0 32 ............................ TCCCTGAGCGGGAAGGGAAGGCCATCAGGCCA 34759 28 100.0 33 ............................ ACTGGGTGCGGTCTCGGTACTCGGATGTTGAGT 34698 28 100.0 32 ............................ GTAGCCGACCGCTTGAACGACACCGCGAACGT 34638 28 100.0 32 ............................ TGGCTGCGTGCGGGCGAGTTCAAATGTAAGTC 34578 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 34518 28 100.0 32 ............................ TTGCAGCGTGAACATCGATGGCATGCATGTCC 34458 28 100.0 32 ............................ ATCACGATAACCGGTCACCATGCGCTTACGAT 34398 28 100.0 32 ............................ TTTACGCCATCAGCGGGGATCGATGGGGCCTC 34338 28 100.0 32 ............................ TGGGCATCCTGCTGCTGTCCGGCACGATGGTT 34278 28 100.0 32 ............................ TGAATCCCTCCTACGACACTTCCAACGTATTG 34218 28 100.0 32 ............................ GTCAACGATGAATATGGCATGACTATCTCGAA 34158 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 34098 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 34038 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 33978 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 33918 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 33858 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 33798 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 33738 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 33678 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 33618 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 33558 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 33498 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 33438 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 33378 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 33318 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 33258 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 33198 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 33138 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //