Array 1 1465-345 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSV010000027.1 Microcystis viridis FACHB-1342 contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 1464 35 100.0 34 ................................... GTTTGCAGCAAGGCGCCAGCAAACATAAAAAAGG 1395 35 100.0 43 ................................... TCGATTTCAGCAGTGGATAACCCCGTTTTTTGCCCGATGGCTT 1317 35 100.0 38 ................................... CCTACCACCGGCACCCACCGCCCGATGGCATGTCGGGG 1244 35 100.0 34 ................................... AATTACCACCCTCGAACAGTTTGATGGCTTGCGT 1175 35 100.0 35 ................................... CATTCTGTGCTGGGTGCGTATAAGTATCAAAGCAC 1105 35 100.0 35 ................................... ATCAGCAGCTTCTTTCTCAGACTCAGAAGAATCTG 1035 35 100.0 36 ................................... GACTCGTCCAAAAAACGATTGGCTTGTTCTAGCCAA 964 35 100.0 43 ................................... GTGGCCGTAACCCCAGACTGAAAAATTGCTTAGTAGCCACTCT 886 35 100.0 33 ................................... TCTTGGATTTTCACCAGTAGTTGCTTCCTGCAT 818 35 100.0 44 ................................... CTTTGAGTGCCGAAAGAACCAACGGAAAACAGAACAACGCAAGA 739 35 100.0 38 ................................... GGCAGAGGTTTTGGCTATCGGAAAAATTGATAAATTTT 666 35 100.0 34 ................................... CGTAGCATTGCCATAGGGTTGCCAAGTGGGGACG 597 35 100.0 37 ................................... TGAAACTGGTTATCGTGGGCGTATTGATACAGTTTTC 525 35 100.0 37 ................................... TCCTCTAAAGCCGCCTTATACTTCGGAAAAGCCTCTA 453 35 97.1 39 ..................................A GATGTGTAGGGTTAACTCATGAATTAACCCTACAATTTT 379 35 74.3 0 T..AA........A..T...T.CC.....A..... | ========== ====== ====== ====== =================================== ============================================ ================== 16 35 98.2 37 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : GCTATTCCTCATCATCAAAAAGCGATGTCGTCCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATCTTAATGGACAAGGCCCTTAAATCTGCGGGTATTAGTCCATAGGATCAGTTATCAGTTATCAGTTAAGTAGGTAGGCGTTAAAAGTTGTCAGATGCCCCCCTTATTAAGGGGGGATTAAGGGGGGATCCCCCCGCCTATCGGCACCCCCCTTATCAAGGGGGGCAGGGGGGATCGAACCTAAAATCCATTTTTAATTTAATTATAACCAGCTACTTATCAGTTATCAGTTATCAACATTTTTCGCGGGTTAGACACAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGCAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGACAATTATTATTAATAATGTCTATGCTTTTCAGTATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGCTTTGCAAAGCTAGT # Right flank : CGATACTTAATTAAGAAAAATCAATGAAAATAAAGATTGTTTAAGAAAAATTATTTAAAATTAACACAATAATTAGAAATTTAGTGATAGAGGCCAATTCAAGTCTGAATTGCATCACTGTCTGATCTACCTTTATAGAATACCTCATTCGGGGTACGATAGTCAAGACATTTTCGAGGACGATTGTTAATCAAGTTTACGGCTCTTTCCACCTCCTCTGGCTTAACGATTTTAAAATTCGTTCCCTTGGGGAAAAATTGTCTTAACAGTCCATTGGTATGCTCGTTTAATCCCCTCTCCCACGAATGATAAGGAGTAGCAAAATAAAAATCTGCTCCTAGTTTC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 4456-3917 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSV010000027.1 Microcystis viridis FACHB-1342 contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 4455 35 100.0 37 ................................... GTAAGCGTATAATAAGCCAGCGTAAACGTATAATAAG 4383 35 100.0 39 ................................... TCAAGGGACGTCCCCAAGAGGCGATCGTGTAACTTTTCG 4309 35 100.0 35 ................................... TGAATGGAACGTCTTCTCCAAGATGCCAGGCAGCA 4239 35 100.0 36 ................................... TTTTGGAGCCGCCCATGCAGGCAATTCTCCTTCCAG 4168 35 100.0 38 ................................... CACAGTGTTGGCTGTCTTCTTAAGATTAAGATAACTTA 4095 35 100.0 37 ................................... CAAAAGAAGCATCACCTAACGCAGTAATTTGACTGAC 4023 35 100.0 37 ................................... GTAAACTAACGATGTTGTTACGCACCTTGTAGTCAGC 3951 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 8 35 100.0 37 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : AGGAGGTTTATATTGGTAGCGCCGATTGGATGACGCGGAACCTGACTCGTCGCGTGGAAGCAGTGACACCCATTGATGAACCAGCGATCGCCAAGGAACTAGAAGAAATTCTCGGGATTATGTTGTCAGATAACCGACAAGCATGGGAATTACAATCCGATGGCAGTTATATTCAGCGTCGTGCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGACAAAGCCCTTAAATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATTAGTTATTAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACAAAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGTAAGGCTTTGAGCCTCATGACCGAGGTGACTATTGACAATTATTATTAATAATGTCTATGCTTTTCAGTATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGTTTTGCAAAGCTAGT # Right flank : AGAATGCCAGGGATCAATCCCATCTCATCGGTTAAGAAAAATCCGAGATTTCAGCAGGATTATGCGTCAGTGGGGACAACAATTTCAGAGGAACTTTAACCAGACTGAACTCGGCAGAATAATTTATGCGGGAGGAGATGATTTTTTAGGCATCGTTTATAATAGCCAATTTCCTGATCCACAACTCGACTCGATCGATCTCGATCGAGTTCTCCACTGGCTACAAACCCCTCATAAGTAGGGTTTGCTGAATAAATGTGAAATGTAGGCAAGGTCAGGGTTTTGTGGCTTTTCTCGTGAAACAGGTGCAAGATTTTGAGAGAATCGTGCTTCAAAACCTTGCGTCTTCATCGGCCCGCGTCCTGTAGGGGCGAAGCATTCGGGCAGTAACCTATCGGTGAAACCGTAGATTTTCTATCCGAATGCTTCGCCCGTACTTTTTCAGCAAACCCTAAGTAGCGATCGCACTTTCAAAAGACCAAATAATCACATTTAAAGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 669-120 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSV010000032.1 Microcystis viridis FACHB-1342 contig32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 668 35 100.0 40 ................................... TTAAAGTAGTGCTAAACTATATTTGACTTACTTAAATCTA 593 35 100.0 37 ................................... TGGTAATCAAAAAGATCATAGTAGCCGCCGTTGTCAA 521 35 100.0 38 ................................... TAGACAAGGAGATACAGTTTATTGGGCTGATGATAAAC 448 35 100.0 37 ................................... TCTAGAGGTCGATCCGCGCCTCTATCCCCCTCGATAA 376 35 100.0 41 ................................... CGAGATGCCTTCAATGCGAATACCCGTCTTCATTTTTTACT 300 35 100.0 38 ................................... CTTGGGGTTAAATTCGGCAAGATAACGATTGCTGTCTC 227 35 100.0 38 ................................... CAACGTAATCGCCGTTATCGGTGACGTTTAGTATTCCG 154 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 8 35 100.0 39 CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAA # Left flank : GTTTTCAATACCTACCTACTTAATCATGTTATTTTATGTCATCGCCTATGATATTCCCTGCAATAAAAGACGTAAAAAAGTGGCTGATTTACTAGAAGGATACGGCCAACGGGTTCAGTATTCAGTTTTCGAGTGTGTTTTAAGCAAATCTCTATACAATCAGTTAAGAGAACGCCTGCAAAAGCAAATCAAAGAAAACGAGGATAGTATTCGATTTTACCCCATCTCTGGCCATACTTTAGCACAAATAGAGACTTTAGGCGGTGTCCCGCTAACTAAAGCGCCAAGTTCTACGATCATCTGATTCGGTATCATCGACTAGCGACGGATAGGGGTGGGAGCAGATAACCTCGGTTTCCGGTAAAATCCCTCGATCTACCACAGGATAAGGGTTTTGTGGTTTATGGGGTTGACTGTGCGACCGTATCTAGCTATAATTAACTTATCCGTCGCAACTGGCTTCCGAACCCCAATCCTGTTCGGACGTTTGCCTACCGGCT # Right flank : ACCAAAGAGACCGTTAAGGTTCGCCAATTCAAAAATGAAACGCATCAACCTCAAGAGTTGACAAAGAAAGGCTCATCAGGTACTGTCTGATCATTAACAAAAACAAATCAGACCCAAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 33191-32724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSV010000053.1 Microcystis viridis FACHB-1342 contig53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 33190 38 100.0 32 ...................................... TGAATCCTAACTCTTTCCCTAAATCAGCAGTA 33120 38 100.0 35 ...................................... ATCGCATTGATTGAAAGTGTGGTATGATAGTAAAG 33047 38 97.4 33 .....................................G GTTAATTTTTTCTAAATCGAATCGGTACGTCGG 32976 38 97.4 36 .....................................A GATTAATTCTCTTAGTGCCGCTGGTGATTTTTTTTA 32902 38 100.0 33 ...................................... TTAAAAATAGCTGCAAGTTAACCCTAAGTCCTT 32831 38 97.4 32 .....................................A GGGGTTAATGGCGTTTCGGAGCGCCAGTTTTA 32761 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 7 38 98.9 34 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACT # Left flank : GAAACTAGGAGCAGATTTTTATTTTGCTACTCCTTATCATTCGTGGGAGAGGGGATTAAACGAGCATACCAATGGACTGTTAAGACAATTTTTCCCCAAGGGAACGAATTTTAAAATCGTTAAGCCAGAGGAGGTGGAAAGAGCCGTAAACTTGATTAACAATCGTCCTCGAAAATGTCTTGACTATCGTACCCCGAATGAGGTATTCTATAAAGGTAGATCAGACAGTGATGCAATTCAGACTTGAATTGGCCAT # Right flank : GGAACTTGAAACCTTCTAGTCTATTAATTTCAAAATGAGAATTGCTGTCAGTGAGTTTATCGAACTGCTTGCGTCCAAAATATCCTATAAATTAGAGGAAGTATAAGCTAATTTGTATTGATAGTAAATCTGTTTTTAATAGTATGAGCAACTCTCAATCGCACGCTAAAAACCTTCTCCCTTGTTCCTTCTCCCCACTTCCCCATACCTATTACCTAGCATTGTTAGTATTCTATAATACCAATGCTTAGGAAACTATAAAGAAAATCCCAAGATTAGGCGAGTCCCTTGGCGAAAAAGGCTATAGTAGCATAAAATCCGTAATTTTATCTACAAAATTGTTATGACAGTTACCAATAGACAAGAGCTAGAAGAACTGATTCAACAGGTGAAAAAAGCTCAACAACAATTTGCCAACTATAGCCAAGAACAAGTAGATCTTATCTTCAAAAAAGCGGCATTAGCAGCCAACAACGCTCGCATTCCCTTGGCTAAAATGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACT # Alternate repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 9594-8900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSV010000107.1 Microcystis viridis FACHB-1342 contig107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 9593 36 100.0 36 .................................... ATTAACAGCGCAACTTGACAAAGAGATGAGTCTTAT 9521 36 100.0 35 .................................... AAGTTTGAGATCATGAACGCAATGGGTGAGTATGG 9450 36 100.0 35 .................................... AGATCTGTGTGACAATCTTGGTTTACGACCAGAAC 9379 36 100.0 38 .................................... GGAGCTTTCCATGAGCCGAATATTGTGGTTTATGTGCC 9305 36 100.0 45 .................................... TCGGGGTATCCCGATTATTCAAGAGTTTGCAAAGCAGTTTGGCGT 9224 36 100.0 36 .................................... ATGCTCAAACAGCAGCATATTTAGGAATGCAGCCAA 9152 36 100.0 33 .................................... ATGGGTGACCTCATAATCGATTCTATGATGCGT 9083 36 100.0 36 .................................... CTCGCCACTATCGAAAATTCGTAGCGGAAGGAAGAG 9011 36 100.0 40 .................................... TTGATTACCTACAGGAGACAGGTAACACTGTCCCTCGGGT 8935 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 10 36 100.0 37 GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Left flank : GTCCTAAGTAGGTAGGCACAATTATTTGAGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATAATATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGTAGGATGGGTTAGCGGTAGCGTAACATAATCGGGCGTTGGGTTTCATGCTTCAACCCAACCTACGTTCATTTTATATTTAATTCCACCCACCTACTTATAGATATTTCGACAAAATTGAAAGGCAGAAAAAGGGTTTATAAAGAAACCCTTTTTCTA # Right flank : AGTACCCCTTGGAAAGTCTCATCGAGAGGGGAAGACAGACCCCCAAATCGACGCACCTGCAAAAAGAGGGTTAAAAGGTGGTATTGGGGGGGGTAAAAGTCCCGATACCAAAGGGTAGAACCCTGACTGGGAGAGCAATCGACGCACCTCAACCAGAGAATCGGGGTTTTAGGTCGGGGAGGGGGTGCATCGATTTTCAGTCAAGAGTTAGGGGACAAGCTAGATGATATAGAGATTTGGGGGTGGTTGAGGAGGAGAACCTCCCATCACCAACAATCTAGAGACAGCTTCTTCGGAAATCCCATAGAAGCGCACATCATCCTCTTGAGGATTGACCCTTTCTACTACTTTAGCGTACAGTTTCCGCCTCTCGATGTGTAATTAATTTTGCTTAAGTAATTATCTGTAATTAAGTAGCTGGTTATAATTAAATTAAAAATGGATTTTAGGTTCGATCCCCCCTGCCCCCCTTGATAAGGGGGGTGCCGATAGGCGGGGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 28828-25832 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSV010000062.1 Microcystis viridis FACHB-1342 contig62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 28827 36 100.0 37 .................................... TCACAGCACAAATTAACTTGAGGGATATACCCATCGT 28754 36 100.0 41 .................................... CAAATCGCGGCTACGGACTACTACTCTTCGTTCTTCACTAC 28677 36 100.0 43 .................................... TCTATCCAATCTGGGTAACAAGGAATAGGTAACTGCGAAGGAA 28598 36 100.0 37 .................................... AGCCACTGGGTGACTTCTCTAGGCGTTAGGTATTTTT 28525 36 100.0 36 .................................... TAAATAATCAATTATTCCCCAATATAGAATTTTCTA 28453 36 100.0 40 .................................... TGAATGAAAAGTGTTACCAAAAGAATTGTTTATGATTAAT 28377 36 100.0 37 .................................... AAACGACGAGTTGAAGCTTTATCTATCGTGTCTTCTA 28304 36 100.0 40 .................................... AGCTTTTGCTATAAAAGAGGCTATGGTGTGACTTCCCCAG 28228 36 100.0 36 .................................... AGAAATGAGCAGTAGGTACACCGAAAGCATTTTCCA 28156 36 100.0 42 .................................... ACCAGGATCGCCAAATACAATCGCACCCGATACCGATCCGCT 28078 36 100.0 39 .................................... TTAAATGAAAGGCTGTCTAAGTCTGCCAATAAAGTTTTA 28003 36 100.0 36 .................................... ACGGACTACTACTTTTCGTTCATCGCCACTTGTAAG 27931 36 100.0 40 .................................... CTCTTCAATAGATTGAGTTAATTCAAGGGTTTCCCATTTC 27855 36 100.0 37 .................................... TCCCCACAAAAGACTTTAAAGCCCCTAAATTTTTCCA 27782 36 100.0 38 .................................... GCCTTAGTATCGGGTAATTGATGAAGATTTTTACTGTG 27708 36 100.0 38 .................................... TTGTAATTGTTCCGGCGACGCATGGGATTGGCTAAGAA 27634 36 100.0 40 .................................... TAGAGAGTAATCTTGTAATCTGACAAGATTTAAGTCGGAA 27558 36 100.0 36 .................................... CCAAACAGCAATAAACTTGATAAACGGCGCGGCGGA 27486 36 100.0 41 .................................... TCTTCAAAAGCTTCCCTAGACTTAGCAACATACATCTTAGA 27409 36 100.0 40 .................................... GATGTCTAGCCTGACATTAAAGGCAATTGAAGGTAAGGTA 27333 36 100.0 37 .................................... AGCCATAGAGTCTTTTGACGAAATGGTGGGCAAATTC 27260 36 100.0 40 .................................... TATTTCTGAACAGATGTACTACTGTAAATACTCATGGTTT 27184 36 100.0 36 .................................... GCCTCAAGAAAAACAAATGGAAAAGGCCCTGCTTGC 27112 36 100.0 39 .................................... AGTTAAAAAGATAGAACCGATGTACTCACATACAGAGTG 27037 36 100.0 38 .................................... ATAGGTACAGGTTCACCTAATAACATATCGACAAGTTG 26963 36 100.0 38 .................................... CATTCTTTTTCTGTTCTGGGTTTTGGCGGATCTGTCAA 26889 36 100.0 36 .................................... TGGGCATCCGCCCACATAAACCCAATCTTCATAACT 26817 36 100.0 37 .................................... CAGGAGTATTGATACGTTCTATTTCGATTGGATTCTT 26744 36 100.0 36 .................................... TAATCTCCAGAACTGAATCTGACTTAAATCTTGATT 26672 36 100.0 36 .................................... ACTAGGTTTTTCTATAAAAGTACCCTTGATAGGATA 26600 36 100.0 41 .................................... TTAAAACTCTTGCCATGTCATCGGGTCGGTTGCTGGCTCAC 26523 36 100.0 36 .................................... ATTACACCTTTACTTTTTCGAGTCCACGCTGTTCTA 26451 36 100.0 38 .................................... TTTTCCTCGATAGGAATCAAGGGAAGCGATAGACCGAT 26377 36 100.0 38 .................................... AAAATAAATCACATCACCAACCACTAAGTCAGTGATTT 26303 36 100.0 36 .................................... AGGATTCCGGGGATGCAGTCTCGCTCGTCGGTTGAT 26231 36 100.0 38 .................................... TCTGGAAGGGGAAAATCGGTAAAGGGTATCTTTTGTTC 26157 36 100.0 35 .................................... TATTTCTGAAATTCCCAAGGATCGGCCGCAAGTGG 26086 36 100.0 36 .................................... TTCTTTCATCTTTTGCAAAGAAATCTCATGATCTGG 26014 36 100.0 38 .................................... GACGAGGCGGGAGTCTCGAGTCTTGCTGCTAAGTTCTC 25940 36 91.7 35 ............GCT..................... CCGCTTTAAATTTTGGATTGAAATTTTGTGTTTAT T [25925] 25868 36 77.8 0 ............ACT...............CTCCC. | T [25847] ========== ====== ====== ====== ==================================== =========================================== ================== 41 36 99.3 38 CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Left flank : GAAACTAGGAGCAGATTTTTATTTTGCTACTCCTTATCATTCGTGGGAGAGGGGATTAAACGAGCATACCAATGGACTGTTAAGACAATTTTTCCCCAAGGGAACGAATTTTAAAATCGTTAAGCCAGAGGAGGTGGAAAGAGCCGTAAACTTGATTAACAATCGTCCTCGAAAATGTCTTGACTATCGTACCCCGAATGAGGTATTCTATAAAGGTAGATCAGACAGTGATGCAATTCAGACTTGAATTGGCCGTTGTTAATTATTTTGTTTA # Right flank : CAATCCCTTTCCTGTTGACCCTTGCAAAAGTGCCTCATCTCAACAGACGATTTAAATGCGCTGGCAGCTTATCCTATATGGTAATGTTTAATTATATTCCCACAAAAGTTGCTTATGTCCTTACCTGAACTCCCTCTTCATCTTCAATTAACCCAAATGGTTTCGGGTTATTGGCTATCTCAGGCCATCTATGCTGCGGCTAAATTAAGTCTAGCCGAGCATTTAAGCAAAGGAACGAAATCCTGTCAAGATTTGGCCTCCCTAACTGAGACTAATCCTGCTGCTTTATACCGACTGATGAGAGCATTAGCTAGTGTGGGAATTTTTCAAGAAACTGAATCTCAACAGTTTATACTAACTCCCTTAGCCGAACATTTATCTAGTGACCATCCCCGGTCAGTAAAAGCGACAGCGATTATGTTAGGAGAAGCCCCCCATTATCAAGCCTGGGGAAATGTGTTACATAGTATTAAAACGGGACAACCATCTTTTGATGATGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 14895-740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSV010000014.1 Microcystis viridis FACHB-1342 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 14894 37 100.0 36 ..................................... AAAATCACTATAAATGACCATAAGTAACCATAAACG 14821 37 100.0 36 ..................................... ATTGATGTAAAATCCACGGTTGTTACTGCTAATCAA 14748 37 100.0 35 ..................................... CTGGGATTTTTTGACTTGTATGCAGAGTGCATACA 14676 37 100.0 34 ..................................... AGCATTGATTAAATCTTCTGGTTCATCTTCACTC 14605 37 100.0 36 ..................................... ACTTCAATACACTTGATCCACCCTAGAGCAGGAAAG 14532 37 100.0 35 ..................................... ATCCTGTAATAGCAAATGCAGCTTTTCAGACACCT 14460 37 100.0 38 ..................................... CTCGACTAAAAACAGTTTGCATACCACAGCGAATGCAG 14385 37 100.0 36 ..................................... TCTTATTGAGGCTTTGCTAGAGGTGTATTTAGAGGT 14312 37 100.0 34 ..................................... CCTCTCTTGTAGAGGGGTTTTTTTAGTACAAACA 14241 37 100.0 33 ..................................... TTTCAACCAATCGGCCACATCAAAACCTTTTTT 14171 37 100.0 35 ..................................... TAGAGGATTGGTTGCTGGGGATGGCGATGTTTATT 14099 37 100.0 34 ..................................... AAAGTTAGTCGCGCATTCGCGATCACGTGCTTGA 14028 37 100.0 35 ..................................... TTTCTCTTTAGCCCAGGAGCTTATTGAATCATTGC 13956 37 100.0 36 ..................................... CTGACTGTTTTAGACGGCAAAACGGGGCGAAGAAAA 13883 37 100.0 38 ..................................... ATAAAAAAAGCGGCGGAGGAAACCGCCTAATGAACCAG 13808 37 100.0 37 ..................................... GATTGGGCGGGCTGGGGGCCGGGCTGGTGGCTGGTTC 13734 37 100.0 38 ..................................... TTTGAAAAATATTTTTAGAAATTTTTTCAAAACCCCTT 13659 37 100.0 37 ..................................... TCCTCGGTAAATTCTTGGATTCGCGCCGCTCGCTCAG 13585 37 100.0 35 ..................................... ATTCGCTTAAAACCCGCCGCCGCACCCGTATTAAG 13513 37 100.0 33 ..................................... TTTATTGTGGCTGTAGGATTAGTGAGGCCTTGT 13443 37 100.0 35 ..................................... CTATACTCGATACCGTACCTAGTAAATTTAGTGAG 13371 37 100.0 36 ..................................... ACTATTTATTATACTGCTCCGCCCGTTAATAGAATT 13298 37 100.0 34 ..................................... GGGGACAAGCCATGAAGCGATCGATAGATCACTC 13227 37 100.0 36 ..................................... CAAAAGTCGGGCATTCAGGTTAATAATCGGTGGTAC 13154 37 100.0 35 ..................................... TTACTCCTAATTGTTTTGATTTCTTGACTGACAAC 13082 37 100.0 33 ..................................... GAAAATATGGGATTTAGCCCTAGCCTTGTTTGC 13012 37 100.0 35 ..................................... TCAGAAATATTACTGCAACGGCCACTATAAAGCGA 12940 37 100.0 33 ..................................... GATCTTCCTGCTTCGTTTCCCCGGTGAGCAGTT 12870 37 100.0 38 ..................................... AAAACCGGCATTTTCCTAAAAATGTCCAAAATTGAGCT 12795 37 100.0 38 ..................................... TTAGTCTTGCCATTTTTGTCACACCTTGTCACACTCTT 12720 37 100.0 35 ..................................... TTATGTCTCGCCCCGCGAGGAGTGCCGGGAAGCGA 12648 37 100.0 38 ..................................... TCCCTTGTAGGATAAGAGCGTTGTCGAATTTAGCACCC 12573 37 100.0 36 ..................................... GTTGGACGAACTCTTTTAATTCCTTACTGACCTGTA 12500 37 100.0 39 ..................................... TCTATTGAATTATGGCTAATTGTGTATTTCGAGGTCCAA 12424 37 100.0 37 ..................................... GATAAATGCTCAATTATTGCTAATGTGAACATGATTT 12350 37 100.0 38 ..................................... CCAAACCGGCAAGATCGGCAATCTTGCAGTAAGCTAAG 12275 37 100.0 35 ..................................... AAGGCCATGAGCCTAAAAAAATACCTCAACAATTG 12203 37 100.0 35 ..................................... TCAATAGTTGAATTTTTGCCGATAAAAGAGATCGA 12131 37 100.0 37 ..................................... TTTTGGGCGGCCCCGATGGACTCTATCGCATTCTCAG 12057 37 100.0 35 ..................................... GTCTATATGAAGGCTATAGCGAGATTTTCATTGAT 11985 37 100.0 34 ..................................... TTTTCGGTGGCCTCTGGGCGCTTTGGCTCCGGGC 11914 37 100.0 35 ..................................... ATAAAAATAGTGTACATTTTTCAATCGATCAACTA 11842 37 100.0 36 ..................................... CTTTTGTACTATGCTCGGCTTTTTCTGCCGGGCATT 11769 37 100.0 33 ..................................... GTAGTCCAGAACCCAGTCCCAGCAAGGGCGACA 11699 37 100.0 34 ..................................... ATTCGATTTTCTGATAAGCAAGAAATTTCCCCGA 11628 37 100.0 35 ..................................... ATGCTTTGGGTGGGAAGGGTCTGCTAGGGGAATAT 11556 37 100.0 36 ..................................... CAAGATGCCCAAAAACAGGCAGAAGAAACAGTTAAG 11483 37 100.0 35 ..................................... TTTCTGCGTGACCAGTTGGGAGCAGTGAACGAACT 11411 37 100.0 35 ..................................... AGAGGAGTGGATAGCTAGAGTGGGGCCCACCCCAT 11339 37 100.0 35 ..................................... AAAGATTTTTGGTGTAAATATGGCTGGCAAAGGAG 11267 37 100.0 34 ..................................... GATATTCCAGGACAAGCAACGGCGGCGACTTCTT 11196 37 100.0 37 ..................................... CCAAGGGTAAGCATAGCCAAAGTTTCAGCGAGAAATA 11122 37 100.0 36 ..................................... TAAGTGTCGATTAGGTATGAGCGATTTTCGGGATAC 11049 37 100.0 34 ..................................... AAAATTCTCCCAATCCCAGCGAAATTATCAGAGC 10978 37 100.0 34 ..................................... GCGCTATAGCGATCTGATATTCGTATTCTCTCTG 10907 37 100.0 35 ..................................... ACTTATCATTTACCGATAAAATTTGCAGATTTAGT 10835 37 100.0 35 ..................................... GAAAAAATCTTAAAGATAGAAGCCGCTATCGAAAA 10763 37 100.0 33 ..................................... CAACTTTACGCGGCAAACTAAAAAGTAATTCAA 10693 37 100.0 36 ..................................... TTTCTTTTTTTTCCTCTATAGTCCATCGACATTATC 10620 37 100.0 35 ..................................... TTGGCTATTATCCATCCTTGATCATCACCATCATC 10548 37 100.0 36 ..................................... GCTTCCAAGTTTCTATTTCTGAAAGAAATAGATCAG 10475 37 100.0 36 ..................................... TTCCATTGCTACGATGAAGCAACTACTCAAAGAACC 10402 37 100.0 42 ..................................... ATTTAACCCTGATGGTGGTGGTGTACCAGTTAAGAATTCTGT 10323 37 100.0 34 ..................................... AAAAGCTGGCGCGGGCGCAGTAGCGGTAACGGGA 10252 37 100.0 33 ..................................... TTCCCCTACAACGAACCTACATCGGAGGTAAAG 10182 37 100.0 34 ..................................... AGAGAATCAGTGGCAAAATTTTGCCACACGAGGA 10111 37 100.0 34 ..................................... TATGATTGAACTTCCAAGTCTTTAGGAGTAACTT 10040 37 100.0 36 ..................................... AAGCGAGTTAGAGACCGTAAACATAAGAGTAAACAG 9967 37 100.0 34 ..................................... TTGTCACGCCTAACTCGGCTGCTACATCATCCTG 9896 37 100.0 35 ..................................... CAGCTTTTGAATCAGCTCCCCTTTTGATTCCGATA 9824 37 100.0 36 ..................................... TAGTCTCGTTTCGTTTCTTCAAGATAAAGAGCGATC 9751 37 100.0 35 ..................................... AACGCATAAGTAGTATTAATAATATTAGGGTAAGG 9679 37 100.0 36 ..................................... TGATGATAGCTTTGGCTCTAATCTAGAGTCTGCAAA 9606 37 100.0 42 ..................................... AACCAGACTGGACTACGCGGCAAAATTTGGGAGAACGGCAAA 9527 37 100.0 33 ..................................... TTGCCCTCGGACTCGGCCTTTGCGCGGATTCGC 9457 37 100.0 34 ..................................... TTGCGTTTTCCTTTTAGCACCAATTCAATTCGAT 9386 37 100.0 34 ..................................... GCTTTTGTAGCAAGGGGTAGAGCCACTCCTGCTC 9315 37 100.0 38 ..................................... GATCACATTGCCACTAATAGTTAGTGTGATATTCGTTC 9240 37 100.0 34 ..................................... TTAGACTTTGTAGATATTGTCAATGCCTTATAGA 9169 37 100.0 34 ..................................... ACAACGCCATTATTATGCGATTAAACCGGCTATT 9098 37 100.0 34 ..................................... GGATGTTCCGCCGATGGTAAAGCTGAAATCGCTC 9027 37 100.0 34 ..................................... ATGGTTGATGCCCTTGACGGGGTAAAATCTGACA 8956 37 100.0 34 ..................................... AAAGCCGCAGAGCAAAAAGGTGCGCGAATTTATC 8885 37 100.0 37 ..................................... CAATACAGGGTACAGGCTATCGAACGATCCGACTCAT 8811 37 100.0 34 ..................................... GAATTTGATCGGATAGCCCGCTTTATCAAGCCGA 8740 37 100.0 41 ..................................... ACTACCGCAAGCTTCTAAGGATTGCATCCATGCAATAAAAA 8662 37 100.0 38 ..................................... CTTTTTATTTGATAAAAATTGCTCCTAGCTATTGTGAA 8587 37 100.0 34 ..................................... TTTGTGTGCCACATCTCGCAGTGGCAATGGGATT 8516 37 100.0 37 ..................................... TTCGATCGCTTCCCCCCTTCCCCCTTCCCCTTCCCTT 8442 37 100.0 37 ..................................... TTAAAACCCTTGCTATATCTTGATTACAGGCATTCAG 8368 37 100.0 35 ..................................... TTGAGTATCGGACGGCCTCCACTTCTTAGATCCGC 8296 37 100.0 41 ..................................... ACTACACACAGCCGAACTGCAAGTGATAATTTATCTGATCT 8218 37 100.0 35 ..................................... TTTCAAGGACCAAAAGGCGATCCCGGTCAGCCCGG 8146 37 100.0 35 ..................................... TTTTCTGTGTTCCGCCCCAAAGGATTTACAAAAGG 8074 37 100.0 35 ..................................... AAATCACGAACTACTAGGGGATGCTTGACTAAGTA 8002 37 100.0 34 ..................................... TCAATCCTTACCCCATGATAACACATAAAAAGGT 7931 37 100.0 39 ..................................... AATAGTTTAATTTTGGCTATCAGTTATCAGCAATAATTA 7855 37 100.0 35 ..................................... CCGTATCTTTCTTTATAATCACCCTCTACTACAAA 7783 37 100.0 37 ..................................... TGACTCGTTCTTTCCCTATCCCTAATTCTTCGGTAGT 7709 37 100.0 35 ..................................... AGAATCGCAATTATTCCCCGCAATTACTGAGGAGA 7637 37 100.0 36 ..................................... ATGCCAATAGTTAATGGTACTAGCAGGAATATCCGT 7564 37 100.0 35 ..................................... AACTTCGGTGACTGGCAGTGCCGAAGCCGGAGCTA 7492 37 100.0 35 ..................................... ATGTTGGCGACTCGAATCTCATTATTAGAATCGGA 7420 37 100.0 35 ..................................... AGGGGATTGGAGCCAACCAGACGAGATTATATTTA 7348 37 100.0 34 ..................................... TTCCGGGGAAATTGATCTGGCTACTTATGAATAC 7277 37 100.0 36 ..................................... TACAAGAACTGGGGGAATTTATACCCCTGAAGAGAT 7204 37 94.6 36 .C.....................T............. ATAAGTTTTACTCCTATTGAGTTTCATGCTTTTATT 7131 37 94.6 34 .C.....................T............. TTTGACCAATCCCGACAAAGCAGGGGAATCCCTC 7060 37 94.6 34 .C.....................T............. AAAGGATTAGCGATTAAGGGGCTATCTTTATTTA 6989 37 94.6 34 .C.....................T............. CAATCATCGAAGCGATTTTCTATTTTTTCTATTC 6918 37 94.6 34 .C.....................T............. CTGGCGATCCTACTGTCGCCAAGGCGATCCTAGG 6847 37 94.6 42 .C.....................T............. AAGCTCTTCAATTCTTTGGATTCCTCCGAGTTTGCAGCACTA 6768 37 94.6 34 .C.....................T............. AAGCTCTTCTGTATTTTTTCGGTATCTAAAGCTT 6697 37 94.6 35 .C.....................T............. CGGATACCAGATAAGGTTAGAGAATGTCAGCGATT 6625 37 94.6 34 .C.....................T............. ACCCTTGAGTCACCCCAAGACTCCGATCACCCAG 6554 37 94.6 35 .C.....................T............. CGGTTGAATCTTTATAGAATACTTCTAAGTATTTT 6482 37 94.6 33 .C.....................T............. AGGAAAATACTCTATATGGATTAAAGGAAAAGT 6412 37 94.6 34 .C.....................T............. AAAAAGTTTGGAATCTAGATAATTAGCAAATGGG 6341 37 94.6 34 .C.....................T............. AAGGCAAAGCTTGTAATTAAAGAAGTTGAGTCTC 6270 37 94.6 35 .C.....................T............. CTTCTAACTCACGAATACGGATGGATAGTCGAGTT 6198 37 94.6 35 .C.....................T............. ATATTACCGATGGATTTAATCGGGCTATCGCTCCT 6126 37 94.6 36 .C.....................T............. TATTTACTTGATCTTATCTTATGACATTCTCCCATA 6053 37 94.6 39 .C.....................T............. GAGTCTCTTTACTTAAGACTGGATGAACTCCAAAAAATG 5977 37 94.6 37 .C.....................T............. GTGGATGATAGTCCCTTGAGATGCTAAAAGTAACCAA 5903 37 94.6 37 .C.....................T............. TTTTGTAAAGTAGTGTAAGATAAGAGTATCTTATCAG 5829 37 94.6 35 .C.....................T............. TTCAGCAAATTGAGGATTCTTTTTTATAAAATCAG 5757 37 94.6 35 .C.....................T............. ATTCTTATATACCAGTCTAAAACCCTTGCTATATC 5685 37 97.3 35 .......................T............. GTCAATGCTTGACGATTTATACCTCGATATCTCAG 5613 37 97.3 33 .......................T............. GATTTTAGACTCATAGCAGTAACTCGTTAACAG 5543 37 97.3 34 .......................T............. CAATTAGGCGCGATCGATGAGGCGATCGATACCC 5472 37 97.3 34 .......................T............. TGCTTTTGTCCCTCCCCCCCCACCATTAGCTCCC 5401 37 97.3 35 .......................T............. TACCGATACAGCTTCTGCAATTAAGGAAGTAGAAG 5329 37 97.3 33 .......................T............. AATTACTTGCATACTAACTTAGCAAGACTTTTC 5259 37 97.3 33 .......................T............. AGGATTGCCATTCAGCCATAAATCTTTGAGTTT 5189 37 97.3 36 .......................T............. AAAGATGATATTGCCTTAATCACACCATTAAAAATA 5116 37 97.3 34 .......................T............. AATAATATTTGTATTAATTACATCAATCTTAGGA 5045 37 97.3 35 .......................T............. AGAAAATTTTCATTTTTCAAATTTTAAGGGCGAAA 4973 37 97.3 33 .......................T............. AACTGATAAACCAGTTTTCGCAATTCGTCAACT 4903 37 97.3 34 .......................T............. CGATTTCCTCAGTAATTGCGGGGAATAATTGCGA 4832 37 97.3 34 .......................T............. TGTACCAAGAGGTAACAATAATTGCCGAATCCCA 4761 37 97.3 35 .......................T............. GCTAGGCTAATTCGATTTGGCCACTCCTGGCAAGA 4689 37 97.3 34 .......................T............. ACGCAGAAAAACTATCCTTGCCTCTAAGGTATTT 4618 37 97.3 44 .......................T............. AACATTAACTGGCTAAATCCCAGCCAATCAGGATTGTTCCAATT 4537 37 97.3 38 .......................T............. AGCTACGCTTAGTTTTGAGCCAATAATTTTGGCTGATA 4462 37 97.3 34 .......................T............. AAAATTTGCTAAATACCTAGCAGTTTTGGTGACT 4391 37 97.3 36 .......................T............. TCCCGATAAAACAATAACCATTCTCTCCATCATCAC 4318 37 97.3 34 .......................T............. AGTACCCTGTACTATTCATGACTGGTACAAAAAT 4247 37 97.3 36 .......................T............. AGATTTACCCCCCGTGGCTCGATTGAATTTCGAGCA 4174 37 97.3 36 .......................T............. TTCCTGATTCTCCATTGTGGAATCACTTGCCAGAAT 4101 37 97.3 34 .......................T............. AAAACCCTTACCCTGATTGGGTTAGGGGAAAAGA 4030 37 97.3 34 .......................T............. TAAAGGAATCAGTACCCACAGCTTCCGGCGAACT 3959 37 97.3 35 .......................T............. GTGATTTTTGGGAACTTCACAAAAGTTTAACATAA 3887 37 97.3 37 .......................T............. CTAATTCGCGCTTTAGATATAGATATTCTGATTCATT 3813 37 97.3 35 .......................T............. AATTAATCGATTAGCTAATGAATCGGAATATAGTG 3741 37 97.3 34 .......................T............. AACCAAAGTTCCTGTGATCACCAAAAAAGGGCGT 3670 37 97.3 36 .......................T............. AAGGGGAATTTAACTATGCGATTTAATTTTGATGGC 3597 37 97.3 33 .......................T............. CAAATAATCAATCTATCTCCTTGATTCCTTCGA 3527 37 97.3 35 .......................T............. TTTTTCGGGGATTACTGATATAAATAAAAGAGAGG 3455 37 97.3 37 .......................T............. AACCCCGTTGATTTTAAGAGAGAAATAACCTGCTTAT 3381 37 97.3 36 .......................T............. AGGTTTTAGAGAGAGGCGATCGCACTAAGTGGTATT 3308 37 97.3 34 .......................T............. GGATAGCCAACAGCTAGACAGTATAGACACAGAT 3237 37 97.3 34 .......................T............. TTTCCATCTTTTTTTCCTCCTATTTAGGAGGGGA 3166 37 97.3 34 .......................T............. GATGTAATCATTGAGAATTATTTCAAGTCTAGGG 3095 37 97.3 36 .......................T............. ATCGATCCCGCGCCATATAGGAAAAGTCTCACCGGT 3022 37 97.3 35 .......................T............. ACTGCAAAGATGAAGGGGATGAGACAAGCCTATGC 2950 37 97.3 34 .......................T............. AATCGGCGGGATTGGCCCGAAAGCTGCCGACAAA 2879 37 97.3 34 .......................T............. AATCCAGCGCAATTAAGTGAAATGATGAGCGATG 2808 37 97.3 33 .......................T............. ATGGGCAAGGTTAGCTATTCTGATGGACAGTTT 2738 37 97.3 34 .......................T............. AAAGTGGCATTCTGAAAGTCTAGAATTTCTGAAC 2667 37 97.3 34 .......................T............. AGCACCCATAGCTTCCGGCGAACTGCTCTAACCC 2596 37 97.3 42 .......................T............. TTTGCTCTTTCCTTTCTTCTTTTTTGCCAAACGGCCACCACG 2517 37 97.3 35 .......................T............. CGGCGTTCGATGGGGAAGGCCAGGCGATCGGATAC 2445 37 97.3 36 .......................T............. AGAATTTTATCATTTACAGTCTGAAAAGGAATTATC 2372 37 97.3 34 .......................T............. ACCCGTCTAATCATCGATGGTTTACCATGCCCTA 2301 37 97.3 34 .......................T............. GAGCTAAAATGTTGAAAGTAAAGTACGAAGGATT 2230 37 97.3 36 .......................T............. TAATATGGGTGTACCACCGAATTTTTTAGGAGCCAA 2157 37 97.3 35 .......................T............. AGCCTTGGCTTTTTTGCCCCTTAAAATTCTGGCAA 2085 37 97.3 35 .......................T............. TAGATGACAGTTTAGATTATAAACTGCGAATAATA 2013 37 97.3 36 .......................T............. ACTTTATAATCGGATCTATTAACAACTGGCATATTT 1940 37 97.3 34 .......................T............. CCCTCAGTTGCCTCGCTATCCCACTTGTAGAAAT 1869 37 97.3 36 .......................T............. TGTGGAGTACGCGGCTTATGTTCACGAAGGTTATGT 1796 37 97.3 33 .......................T............. CTTTTTCTCCTCTGGATTTTTTGACTTTTTAGC 1726 37 97.3 39 .......................T............. CGCAATCTGAAATTAGGATTATTGCCGTAGATCGCCCGT 1650 37 97.3 40 .......................T............. ACAAGCAGGCTTTTTTGAGGGCTGGTCGCTGGGTTGCCAC 1573 37 97.3 37 .......................T............. CAGCATAAGCTCGCCCGCTTTCTGTGATTTTAAAAGT 1499 37 97.3 39 .......................T............. ATCAGAAAAAATCAATATAGGGAATTAAAAATGCACACA 1423 37 97.3 35 .......................T............. ATCTGCCAAATACTCAAACTAGAAGCAAAAATCAA 1351 37 97.3 35 .......................T............. TGATCGCTGATTCTGAGTTGGCAGATTCAGTCAAT 1279 37 97.3 35 .......................T............. TTCATTGTTTTTACCTCCTAATTAAAATTCACCTT 1207 37 97.3 35 .......................T............. GTGTAAAGGCTTTTTAGCCCTAAATTTATCTCTTT 1135 37 97.3 34 .......................T............. AGAATTGGAGCTTATTCAGGCACTTAAGGGGCTT 1064 37 97.3 34 .......................T............. TTTCGCCTTGGGCGATCGCTTGCTCTAGTTGGTC 993 37 97.3 34 .......................T............. AGAACGGCAATTCAATCAATCATGACCAACGGGC 922 37 97.3 36 .......................T............. CCGCCATCAGCAAAACCAGGAATCGGCAACTTCAAC 849 37 97.3 36 .......................T............. TTAGTTTAGCGGCAGCGGCTGCCACTAAACCAGAAA 776 37 97.3 0 .......................T............. | ========== ====== ====== ====== ===================================== ============================================ ================== 196 37 98.5 35 GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Left flank : TTTGTTGTCAGTTACGATATTTCCGACGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCTAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGCGCCTGTTGTCGGGGTAAAGTGGAACGTATCGGTGGTGAGTTACCCCGGGATAATACAATTTTTTTTGTTTAGCTCGGTTGCGCTTCCGGGTAGCTGTAAAAATCCTTAACTATTATCTGGTGGCTGAAAAGCTTATGGAATATAGATTCGAGATGATTTTCCTTTCCAACGCGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGGTCTTGAAGAACTGGGTCACTTGCTGTATGATTGGTTTATTGCGGGTGCGGCGCATACGAACCTTGAAAATCCCATAGCGTATAGCTTTTACCACTGGGCG # Right flank : AGACACAATAACGACATTTTTAAACGCTATAATTCGCCAATTCAAAAATGAAACGCATCAACCTCAAGAGTTGACAAAGAAAGGCTCATCAGGTACTGTCTGATCATTAACAAAAACAAATCAGACCCAAAATGAGCCACCAACATCTTAACATAGAACAAAGAAACTTGCTCTACCAACTTAGTCAGGAGGGAAATTTATCTCAACGGCAAATGGCCGTCTGGCTCGGATGTCATCAAAGCACAATATCACGGGAATTAAAAAGGAATCAAAGTTCCCTTGGCTGCTATCTACCTGACACAGCACAAGCTGAAAGCGAGACAAGGCGAAAAAATGCCAAACAACCCTTTAAAAATGTCAGCGAGTCAGCCTTAGAGTTGGTCAAAGAAGGATTGAAAGATTATCATAGTCCCGAACAAATAGCAGGTCGTCTGAAAAGAGCCAGTCAAGAATCTCTCAGTCACGAAACCATCTATCAAATGATCTATCAGAACTATCAC # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Alternate repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //