Array 1 58864-63801 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIK01000004.1 Tepidiphilus succinatimandens strain DSM 15512 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 58864 29 100.0 32 ............................. AAAATCCAGTGTATCCGCTCGACCTATGACCC 58925 29 100.0 32 ............................. GCTGCGTTTTAGGGCCGAAACTAAACACCAGA 58986 29 100.0 32 ............................. ACGCTGGACGAGCTGACGCAGCAGATGAGCAC 59047 29 100.0 33 ............................. CGGCCGGAGGGGGGGGTTCCATTTATCCCCCCC 59109 29 100.0 33 ............................. TACAGCATTGGCAACCATCCATCCAGCCGGGTG 59171 29 100.0 33 ............................. CGGAGCGCCGCGTACTGGACGCCCTAGGGCTGC 59233 29 100.0 32 ............................. CGATCAGCGCCATGATGAGGTCGCCGTCTGCC 59294 29 100.0 32 ............................. CCATCCGCGCCGCCGACACCTTGACCGCCGAG 59355 29 100.0 32 ............................. GCGGAATTATGTCCCCCCGCCCGGGCGATCTT 59416 29 100.0 32 ............................. CAATCCCTAACGCGGATGTGCATGTGGTGCGC 59477 29 100.0 32 ............................. CGCACCCCCACGGCCACACGGCCATCGACCGG 59538 29 100.0 32 ............................. TACGGGACCGGTTCAAGGCGATGCTTGGCATC 59599 29 100.0 32 ............................. GATGGCGACATCGTCAGCGGCGCCAACCTGCA 59660 29 96.6 33 ............................T TTGCGTCGCGGTGTTGTCCAGCAGGCCGAAGAG 59722 29 100.0 33 ............................. AACCATGAACCAGCTTCCATCCCCTGCGCGCTC 59784 29 100.0 33 ............................. TCGCCACTGGCGGCGGCGCGGGGCAATACCAGC 59846 29 100.0 32 ............................. TCGGCGACACCCGCAGCGTGCTGATGGACAAC 59907 29 100.0 32 ............................. GCCGAGCAGATGGGCATGACCCCGGCGCAGTG 59968 29 100.0 32 ............................. ATCACATTCACATCGTGGCCAGCCGGGTAGGG 60029 29 100.0 32 ............................. TCCTTGATGGTCTGGTGGTGCGCCTTGCTGCC 60090 29 100.0 32 ............................. CAGCGCGCCCCGTTGCCGGGGGCGCCTCTGCC 60151 29 100.0 32 ............................. CATGAAGCGGTTGCGTGAAGGCGTCCTGTTCC 60212 29 100.0 33 ............................. AATTGCGGTATGTTTGGGAATGGTATCTCGAGG 60274 29 100.0 32 ............................. GATACCAAGAAGGCGCTCAACCCGGTAGAGTG 60335 29 96.6 32 ............................T TTGCCATTGGCAGCCCCCATATCGACTACACC 60396 29 100.0 32 ............................. CCATCGGGAGCACGAAACGAGGCGCTGGACTG 60457 29 100.0 32 ............................. CCAACCCGCCACACCTGCGCGTCTGGTCGATC 60518 29 96.6 33 ............................A GGGGTGGGCTAGGGTTGCTTGAGTTGCGATGCC 60580 29 96.6 32 ............................T GCCCGATCTCCCGCCACTGCTCGTCTGTGAGC 60641 29 100.0 32 ............................. CCATCCGCGCCGCCGACACCTTGACCGCCGAG 60702 29 100.0 33 ............................. GAACTGGCGACGCGCTACGGCGGCGACCCGAAC 60764 29 100.0 32 ............................. CCCGTCACGTGCTGACCCTCAGCCGCGACTAC 60825 29 100.0 32 ............................. CCGAATGGCGACCTTCAACGAGGAATACCGCG 60886 29 100.0 32 ............................. CAGTGGACTGGTGGCCCTGCCGCCCTATCCAA 60947 29 100.0 32 ............................. CTTATTGTCCCCTACCGGCGCCCCGTGCCCGT 61008 29 100.0 32 ............................. CGAGGGGGCACCCAATAGCACGCCAATGTGCT 61069 29 100.0 34 ............................. GGCCGCGGCTTCCGCGGCGCGCTGGAATACGATC 61132 29 100.0 33 ............................. TTAGCTAACCGTTCGAGCCGGTTATCTAACTTC 61194 29 100.0 32 ............................. GCAGCGGACGCTCTGAACCAAGCCACGCGGAG 61255 29 100.0 32 ............................. ATCGAAAACCAGATGCCCCGCGGCCAGCTCGG 61316 29 100.0 32 ............................. GCGATATGCGCCGGTGCGCTTAGGGTAGCGCC 61377 29 100.0 33 ............................. CACGCCAGCGTGATCGATAGTTATTTCGTCTTC 61439 29 100.0 32 ............................. CCTCTTTCACCTCCGGCGGAATATCCGTGATG 61500 29 100.0 32 ............................. GGCGACCCCGCCGCCGTGCGCACCTCGACCAT 61561 29 100.0 32 ............................. GGCGCGAAGCGGCCCCGGCTGGCTGGCGCGGC 61622 29 100.0 32 ............................. CTCATGGCTTCTCTTCTCCCCAATCGTCCGGC 61683 29 100.0 32 ............................. CCTCTACCGGGTGCGGGATGCACTCGGCCTGA 61744 29 100.0 32 ............................. CCACGCGGAGGATGAGGTGGAGGCACTACGTC 61805 29 100.0 32 ............................. CATGATGTGCGCGTGCCAGTTGCCATTATGCC 61866 29 100.0 32 ............................. CAAAGAGCAGCGCTTGTGGATCGAGCGGCTCA 61927 29 100.0 32 ............................. CTACAAACTCATCCCCGGCGCGTCGCGCTCGA 61988 29 100.0 32 ............................. TCGCTTTAAACAGGCTAGTGCCGCCAAGCGAC 62049 29 100.0 33 ............................. CTAATCGGCAAGCGCTGCCTGATCTACTCGGGA 62111 29 100.0 32 ............................. CGCCCTGACTTCGCCATGTCCGTGGCAATCAT 62172 29 100.0 33 ............................. GGCTGCGGCAGTTTCACGGAATACGTGGAACGG 62234 29 100.0 34 ............................. TTGTCAGACAAGTGCACGGCACGGCACGCCCCGC 62297 29 100.0 32 ............................. AAGCCGATAGACTCTACCAGTCCGGCAATTAC 62358 29 100.0 32 ............................. TCGGCAGCGATACCGGCGGCGGCGCTAAAGCA 62419 29 100.0 32 ............................. CGCGGGATCGAGGGCGTCGAGCGCCCGATCGT 62480 29 100.0 32 ............................. GCGCGGGCCAGCCGCCAGCAGTGGAGGGTGGG 62541 29 100.0 33 ............................. TGGGTCGCGGTTGCCGTTGGCGGGCTGGTTGGC 62603 29 100.0 33 ............................. CCATCCGCGCCGCCGACACCTTGACCGCCGAGC 62665 29 100.0 33 ............................. CATATCAGCCACGAGACGATCGGTATCAGTTAG 62727 29 100.0 34 ............................. GACACCAGCGCGGTGAATCCATCGATCACCCAGC 62790 29 100.0 32 ............................. CGGGCCGAGCGTGTCATCGTGGCCGGAGAGAA 62851 29 100.0 34 ............................. GAGCGCATGGAGGACAAGCGGCTGCGCCTGCCCC 62914 29 96.6 32 ............................T GCTCCAGCTCGCGTGCGACGCGAGGTTGTTGA 62975 29 100.0 32 ............................. ATCGCAGCGGCAGAGAAACGGGCGCAAGAGGC 63036 29 100.0 32 ............................. GCGGCTTCGGCCGCTATGGACGTGAAGGCCTC 63097 29 100.0 33 ............................. CGCTTCTGCAGCTTGGCAAGGCTGGCGTTGCGG 63159 29 100.0 32 ............................. TCGCTTGGCAACGTCGGCGGCTCCCTCGCGCA 63220 29 100.0 32 ............................. GCTGCGGAAGCGGCCTAATCACAGATACAGAA 63281 29 100.0 32 ............................. GACGATTTGGCGTCGAACCATACTATGCCATC 63342 29 100.0 33 ............................. CCGCAGGCGCTGGAGCGCATGAAGGCGGACGGC 63404 29 100.0 33 ............................. AGCAGGGTATCGGGCGCGGCAAGGCATTCGGCT 63466 29 100.0 32 ............................. ATGCAATCCTTCAACGTCGTGAAGGATCTCAG 63527 29 100.0 33 ............................. ACCACATCGCCGACGCCATGCGATATCGCGTGC 63589 29 100.0 33 ............................. CAAAAAGCCGCCGAGGCGGCCGCGCGGGCTGAG 63651 29 96.6 31 ............................A GTAGCCGCCAGAGGCAGGGACGTTCCAGCAT 63711 29 100.0 33 ............................. GCGCTCTTTGACATCCGGCTGCATCCGCCACGT 63773 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 81 29 99.7 32 GTGTTCCCCGCGTGCGCGGGGATGAACCG # Left flank : GCGACGTATTCCGCCGGACGCGGCTTCTCGAGAAGATCATCCCGACCATCGAGGATGTGCTTGCCGCCGGCGGCATTGCGCCTCCTGAGCCGGCGCCCGACCAAGTGCTGCCAGCCATTGCCGAAAAGGAGCCATTGGGCGATGTTGGTCATCGTGGTTGAGAACGTTCCGCCCAGGCTGCGGGGCAGGTTGGCCGTATGGCTGCTGGAAGTGCGAGCCGGCGTCTATGTCGGAAACTATTCGCGCAAGGTACGGGAAGAAATCTGGCGTCACGTCGAAGCCGGCATCGGCGAGGGCAACGCCGTAATGGTTTGGCGCACGAACAACGAGGCGGGTTTCGAGTTCGTGACCATTGGCACCAACCGACGCGTGCCCGTCGATCTGGATGGCGTCCAGCTTGTGTCGTTTCTGCCGCCAGAGCCCGCGCTGCCAACCGAGAGTGCATCGGTAGGTCAGTAGGTGGTTTGTAATGTCTTTAAAAATATGGAAAATCTGGAAGT # Right flank : GCCTCTAGCAGCCTGTCGGACTTAACCAGGCTATCGGCATGAGATAATGAAGACCTCTCAGGCGGCAACCGGACTTCGATGATGGGGCATTTCGTAGGTGCTGATCGGGACACCGACTTCCTGCTTCCCCCTTCCGTTCAGGAGTGGTTGCCTGAAGATCACCTGGCCCGGTTTGTTGTTGAAGTGGTTGATCGGCTCGATCTGTCCGAGCTCACCCGGCAGTATGCGGGGCGCGGCTCACGGGCCCATCATCCTGCCGTATTGCTGAGCTTGTTGATTTATGGTTACGCGACTGGGGTCTTCTCCAGTCGCAAGATTGAGCGCGCCACGCACGACTCGATCGCGTTTCGTTATCTGGCGGCCAACACCCACCCGGATCACGACACGATTGCTGCCTTTCGCCGTCGCTTCCTTCCCCAGATTGAGTCCTTGTTCGTGCAGGTTCTGCTGCTGGCGCGGGAAATGAAGCTGGTGAAGCTGGGCCGGATCGCGCTGGATGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65428-66867 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIK01000004.1 Tepidiphilus succinatimandens strain DSM 15512 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 65428 29 100.0 32 ............................. TAGCCATCGGGCGAACGCGGCGCGCGCGCCAT 65489 29 100.0 32 ............................. CGTATTGTCTGGGTGAGGCAGCGGCAGACCTA 65550 29 100.0 32 ............................. ACAAATGCCTCATGTGCCGCGACCACGACAGA 65611 29 100.0 32 ............................. CACGCCAGCGGCGTTCCCATCAGCGCGCCGGC 65672 29 100.0 32 ............................. CTTGCCTTGCTGCAGGCCGATGGACAACAGGC 65733 29 100.0 33 ............................. CTCTTGCTGCTGCAGGACGAGCGCCGCGTTGAT 65795 29 100.0 33 ............................. TACAACAGGGACGCCTGAACGTACCTACACCAC 65857 29 100.0 32 ............................. CGGATGAACGCCAAGGGCAACGACGTGTACAT 65918 29 96.6 32 A............................ CCGGGCGGCTATGGCTCGCAGTACGACCCGGT 65979 29 96.6 32 A............................ CGCATGGGGGAGCAGCCGCCTACGATCATCGT 66040 29 96.6 32 A............................ AAAAATGGGCGCGATCAAGCCCGACGCTACCT 66101 29 93.1 32 A...........................A GGTACTGCCGACGCTGCGACTGGAGCCCGAGC 66162 29 96.6 32 A............................ AGAAAGAGCTGCAAGGCGAGCTATAGGCTATG 66223 29 96.6 32 A............................ GTGCTGGGCGTGGCCCTGCCGCGCGACTTGGA 66284 29 96.6 32 A............................ ACGGAAATCGCGGAGCGTGGGTTCATCGCTGC 66345 29 96.6 33 A............................ GCAGAGGGCTACGACGTAGCCGACCTAGATCGT 66407 29 96.6 32 A............................ GGCGACCCCGCCGCCGTGCGCACCTCGACCAT 66468 29 100.0 32 ............................. AGATGGCCGATAAGGCAGCCTACGAGGACGCC 66529 29 100.0 34 ............................. GACTTGGCGACGGCGTTTTGGCAGGGGTGCCGGC 66592 29 100.0 32 ............................. GGCGACCCCGCCGCCGTGCGCACCTCGACCAT 66653 29 100.0 34 ............................. CCCAACGCCTAGGCTCTTTTTCGGGATGGGCTTC 66716 29 100.0 32 ............................. CCTAGGCATGACGGCTGCGCAACCATCCACGA 66777 29 100.0 33 ............................. CCGTTTTGCACGTTTCGCTATCCGCCGCCCCCG 66839 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================== ================== 24 29 98.4 32 GTGTTCCCCGCGTGCGCGGGGATGAACCG # Left flank : CATCGAGCCGTTACTGGCGCTGTCCCGAGAGCAACACCACTTATCCGTGTTTGATCGGTTTGCACCCGATGAGCCGGCGCCGGTCACGGACGACCCGGTGGCGCAGATGAAGCACCGGTTAGCCACCCAATCGGGGCGAGCTCTGTATGCGCTGCGAAAACAAACGGTGGAGCCCGTATTCGGAATTATCAAACAGGTGATGGGCCTGAGGCAGTTCTCGATGAGGGGACTAGAGAAGGTTGCGGGCGAATGGACGTTGGCTGCGCTGGCGTGGAATGTGAAACGGATGAAGGTGTTGAAAATGACGGCGTGAGCGCCTGTTGCCCCCGATGAAGGCCTATCATGGCGCTCTTTGGGTACCGTTGAAGGCGCTCAAGGCTCACTGAGCAGTCGGCTGACGCTCAAAGCCGGTAGCCTAACGCACAGAGCCGCTCAAAACGACGTCCGGCAACTGCAAGTCCGACAGGCTGCTAGAAGCCGTTTTTAGATGTGTGGTAATG # Right flank : AAGGTCTGCGTATAGAGCGACAATTACTCTGGCCGGCGGACGACAACTATTATGGCCGGTTACCCTAAGCTTGGCCGCTTGTTCCGACCCACCAGGGAGCCGGTATGGCGGTCACCAACCAACAGGTCATGCTCTATATGTCACAACGCCAACAAGGCCAGACCCAGGAGGTCGCCGCCGTCAAGGCTGTGTCAAGCGACATCAGAAAGTGACCCCCTGGCGACAGTGAAATCTGACCCCCTTACTCTCTGACGAGCTGCTCGGGATGGTGGATGGAATCGGGCTTGATCAGCCCGGCCTTGCGCTTGGCACGCAGTCGGTAGCTGTCACCGCGGAGGGTGATGACATGACTGTGGTGCAGCAGCCGGTCGAGGATGGCGGTGGCCACCACTGCGTCACCGAACACCTCGCCCCACTCGCTGACCGCCCGGTTGCTGGTCACCAACAGGCTGCCGCGTTCGTAGCGGCGGGTGACCAGTTGGAAGAACAGGTTGGCTGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2484-2087 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIK01000002.1 Tepidiphilus succinatimandens strain DSM 15512 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2483 29 100.0 32 ............................. CTGCCGTCCCAGACGCCAGAATACTGGCGTGT 2422 29 100.0 32 ............................. TAGATGGACTGCAGGCCAGCGACCAGGCCCTC 2361 29 100.0 32 ............................. GGACATCAAAAGAGCATTGACCCGATCCGCGT 2300 29 100.0 32 ............................. GCCAAGATCGTCATCAGCGCCCCATTGCCGAT 2239 29 100.0 33 ............................. TGGGGACCGAGACGAAGGGTTTGTGGTGCAGCC 2177 29 100.0 33 ............................. AGTTCGCGGCGCCGCTCACCCCGCCGCGCTCGC 2115 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCGTGCGCGGGGATGAACCG # Left flank : GCGACGTATTCCGCCGGACGCGGCTTCTCGAAAAGATCATCCCGACCATCGAGGATGTGCTTGCCGCCGGCGGCATCGCGCCTCCTGAGCCGGCGCCTGACCAAGTGCTGCCGGCCATTGCCGACAAGGAGCCTTTGGGCGATGTTGGTCATCGTGGTTGAGAACGTCCCGCCCCGGCTACGGGGTAGATTGGCCGTCTGGCTGTTGGAAGTGCGTGCTGGCGTCTACGTCGGCAATTACTCGCGCAGGGTACGCGAGGAGATCTGGCGCCACGTCGAAGCCGGCGTCGGCGAGGGCAACGCCGTGATGGTCTGGCGCACGAACAACGAGGCAGGCTTTGAATTCGTGACGATAGGGGCCAACCGGCGCGTGCCCGTCGAACTGGACGGCGTCCAGCTCGTGTCGTTCCTACCGCCAGAGCCGGTGTCGCCAAACGGTGGGTCGGCGGTAGGTTAGCGGGCAGTGTGCAACTTATTTAAAAACATGGGAAAATTTCAAGT # Right flank : GATGTCATTCAGAAACGATGCCGAAATACTGCCTAAAAGTGCGTATTTAGCCCAAATTTTACCCGTCCGTCCTGATATAAGGACGGTATGGACAACGCTACTTCTCAGATCCCCATTCCCTTTCACGAGTCGTCCGGTGAACCGATTCCGGATCCTGGTATTGCCAAAGCCATGGACCGGATACGAGAAAGCCTGGAACAGAAGGCCATCGCTGCGGGTCTGCCTGTGCCATCGAATGGCAAGCCGCTCCCGAACGATGTTCTTCGCTCGGCGCTGTTTGGCGTTTCGGAGAAGGTTTTTCGGCGAGAAGAAAAAATCGCTTCCGTGGAAGGCTTGGATGTCTACATGGTGCGGGGCTATCGGCCAACGCAAGCCCATCTCGACGTGTGGGAGCAGTGCCTGGATCTAGCAGCAAAACACGGCACTGGAAAGCGGATTCGCTTTTCCGCGTACTCCTTTCTCAAGGCTATTGGACGAAACACAGGGAAATCCGACTACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //