Array 1 56626-55982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIV01000031.1 Streptomyces sp. NRRL S-1896 contig31.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 56625 33 75.8 28 ...G....T.....G....A......T..TC.A GTGCCAGGCCGGCGGTGCGGGCCGTGGT 56564 33 87.9 28 ..............G.........C....C.T. GTTCCGCATCCCTTGCCCGGACCCTGTG C [56535] 56502 33 84.8 28 TC...........C...............TA.. TGAAGCTCACGTCGACGGGTGCGGGAAC 56441 33 81.8 28 ..T........T.C...............T.TT CCAGTGGCTCCAGCGCGAGGCCGCAGCC 56380 33 84.8 28 ......T.T..................G.GA.. AGACGCCTGCGGCCATCTAGAGGCAGGC 56319 33 100.0 28 ................................. CCCAACGCCAGAGGTTCCGCGGGACACC 56258 33 90.9 28 .............................T.GA TCCTGGTTCCGCCGAACCGGCAGACCTG 56197 33 90.9 28 .............................C.GT CCCTCACCGAGCGGGAGTGCATGATGAT 56136 32 97.0 29 .............................-... CCGTTCGGCTACAACCAGGACGGCAACCC 56075 33 87.9 28 .............G...............CCT. GCATCAGCGCCGCCATCATCGTGTCCGA 56014 33 87.9 0 .......T.....G...............GT.. | ========== ====== ====== ====== ================================= ============================= ================== 11 33 88.2 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGAGCG # Left flank : AGCCCAGAAAAACAACTCAGGAGTTGTACAACCTCAAACCCGTAACTGCGCTCACCGGCCCAGCCGCCGTGGAATGGTGGCAACGCCAAGCCGAACAGTCAGGTCTAAAAGTCGGCACGGTCCACGCCACACGACTAGCCGCAGCAAGCGGCCTAAAAGCTCAAGGCAAGCAGCGCATCCACAACACCCGAACCAGATTCGAGGGCGACGCACTCATCAGCGACCCGGAGCTCCTGCGCCGCCGAATTGCAGAGGGCATAGGCAGAGGCAAAGCTTACGGCTGCGGACTGCTCAGCCTTGCACCTGCAACAGCCAGGTGACCGCGATCACGACCTGGGCCGTGAGGCGCGCAGGCGCCTCGCCGCCCCCATCTTGGCCATCCTTCCCGCGTCGCGGAGTCCCGGTCCTTCCCCTCTATTATTTGCGAGCCCCCGGCCCTCCCTGCCGACGAGGTGGGATGGTGTTCGGCCAAGCGGAAGGTGAAGCGAGAGCGCCGCAAG # Right flank : CGGAGCGTGCCATCGCTCCGGAGAGCGGGCCCTCCGGAGGAGACCCGGTGCCTGCCCGAATCCTCCGCCGAATGGTCCTCTGCGCGTGTCGACGATCGGACTTAGACACGATCTCATTTGGTGAGTCGGCGGTAGCAGATGAGGGTGCAGGCGATGCTGGTGAAGGCAAGGAAGTGCTCGGCTTTGCGCTCGTAGCGGCGGTGTAGGCGGCGGCAGCCGGCGAGCCAGGACATGGTGCGTTCGATAGTCCACCGGTGGCGGCCCAGCCGCTGCGAGGACTCGATTCCCTTCCGGGCGATGCGGTGGGTGATCCCGCGCTTCCGTAACCATCGCCGCAGGTGGTCGTAGTCGTAGCCCTTGTCGGCGTGGAGCTTGCCCGGCTTGCGCCGTCGCCGACCACGGCGGGAGCGGATCGGCGGAATGCCTTTCACCAGCGGGATCAGGGCCTGGCTGTCATGGAGGTTCGCCCCGGAGATCCCAACGGAGAGGGGCAGACCGGT # Questionable array : NO Score: 3.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGAGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 64939-67339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIV01000031.1 Streptomyces sp. NRRL S-1896 contig31.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 64939 33 78.8 28 CC......T.........A.A........T..A CCGGCAGCAAGCTCACGCCGTTCTCGTT 65000 33 87.9 28 A.......................C.....T.C AGGCGCTGGCCAAGCAGCGCGACTCGGT 65061 33 90.9 28 ......T.......................T.T ACGACTACCGGCACGAGGCTTTGGCCTC 65122 33 84.8 28 ............A...........C....AT.C TCACGGTTCGCTGCCGGAAGCTGGGTCC G [65139] 65184 33 100.0 29 ................................. CCATCGTGGTCCCGAACCACATGCTGGAG 65246 33 81.8 28 ...............A........C....GATT TGCACCAGATCACGGCTGACGCCGCTGG 65307 32 87.9 28 ........................-C.....CT GGGTGCCGAACCGCATCGTCACGGGCGA 65367 33 87.9 28 ....................A........G.CT CACCGCCCAGCAGTACCACCGCATCGTC 65428 33 90.9 24 ..................T.........A...A CAGAAAGACCAAGGTCTCCATGGA ATCC [65457] 65489 33 84.8 27 .....A..G.........A.....C....T... GGGTGGAGACGGGCTGACGTCTCCCCG 65549 33 81.8 28 ....C..T....A................T.CT GGGGCTGGAGCCAGTAGGGCGATGCGTC 65610 33 93.9 28 .............................A..C CCGAACCCGCCCAGCGGGAATCCCAGCG 65671 33 87.9 28 .........A..............A....G.T. CGGGCGGGGACGCGAAGGCACAGCAGCG 65732 33 93.9 26 .......................C........A GACACCGCCTCACCCGGATACCGGGC AC [65761] 65793 33 90.9 28 ........................C....TG.. CCTGGTGCAGGCGCCGCTCGGACCGGAC 65854 32 78.8 28 ......T..........-......C.T..TG.A CGTTCTCCCGGCCGGCGTTCGTGGAGTT 65914 33 84.8 28 ........T..............AC....TG.. AGGCCAGTCTCTCCGCTCCCTCCAGCGT 65975 33 90.9 28 .......................AC....A... GGCGGGTGACGATCACCCCGTCGGCGGC 66036 33 75.8 10 .......G......G.T.......C....TACA ACAGCTGGTC Deletion [66079] 66079 33 100.0 28 ................................. TCGACCTCCGTCGGGTTGAGCCGACGCC G,AGG,T,T,G [66082,66086,66093,66095,66097] 66147 33 87.9 28 ...G..............A..........A..C GGCGGCCCATGCGGGCCTCGTACCAGCG 66208 33 84.8 28 ........................C....TTCC TCAAGCCCATGCCGTCCTCGGCCGTCCG 66269 33 93.9 24 ......G.................C........ GAACTTCGGCGCCACCTTCTCCCC GACT [66298] 66330 33 87.9 28 .........A..............C.....T.C CCGAGGGGCACAGGGCGATCGTCGAACG 66391 33 93.9 28 ............A...................T GCTTCTCGGCGACCTTCTGAACGGCCAG 66452 33 87.9 28 ........................C....T.CA TCCGCATGGCTTCGCCGATCTCCCGCGC G [66461] 66514 33 93.9 26 .....................A.......G... CATGAGGCCGGCGTACGTCTCGGCCT C,A [66523,66545] 66576 33 93.9 28 ..............................A.A CCGGGTCGGGGCACTCCCAGGTCGGTGC 66637 33 90.9 28 ..........T...................T.A AGGCCGGGGTCGACTACATCTACTGGCC 66698 33 84.8 28 .........................A...GGAT AGATGCCGCCGGCCTGGCTGGTCGGGCC 66759 33 87.9 28 ...T...............A........C.A.. AGACGAAGTTCCTGACGCTGGAGTCGTG 66820 33 90.9 28 .................C...........A..A AGGCGTATCGGAGGTGGCTGGGCTTGTC 66881 33 93.9 28 ..............................T.C GCTACCAGGGCATCACCCGCTACGTCCT 66942 33 87.9 25 ...............A............A.TA. TGCAGCTCGCCCAGGCTCTGCCCCA CGG [66970] 67003 32 87.9 28 ............T....-......C.....A.. AGAGCTTGTTAGCGCTGATGCCGTTCGC 67063 33 90.9 28 .............................GTC. ACCAGCGGATCTACGACCTGCGACACGA 67124 33 93.9 28 ..................A............C. GCAACCAGACCGGGCTGAAGGAGGAGCC 67185 33 87.9 28 ........................C....T.CA CCCACAGGCGCTCGTACCCATCCGGACC 67246 33 93.9 28 ....................A......T..... TGGACAACCCCTTCGGAGGCGTCTCGGA 67307 33 84.8 0 T............................AACC | ========== ====== ====== ====== ================================= ============================= ================== 40 33 88.9 27 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : TCGGCGACAACTTCCCCAGATCATGCACCCCGCACAGCATCGACACCCAGCCCACCGCATCACCCAGCGGACCGAACGCCCGCTCCAGCTCGCCACGGCAATACGGCCCCACCAGCACATCGACCAGGCCCTCAGCCACCACCGCCGTATCCAGCACATGACAGATCAACGGATGAGGAACCCGCCCACCACCCGCCTTACCCCACCCAGCCCGAACATCCACCACACCACCAGATCCAACCCCAACCACACCTCCTATCCAAACCCCCAAACGCCCCACGCAAGCAGCCTTCACTCCCCATCACGCACCCCAGACCACCCACACCAGACGCTAGATTGAACACGCACGGGCCCCGCACCGAACGCGCCTTGACTCGACAACACACCACAACACCACCCGACACCCCCACCTACGCGCTACACCGACACCCCCTAGCCAAGACACCACACGGCAAACGGTGAAGAACTAGCGCACAGCGGCCGCAGCAGAATGGGCCCCG # Right flank : CCTCGTCCCTCACATCGGGCCCAGGACGGGTTCTCCCCGTCGACGCGGACATCAGCATGGTGCTGGTCGTCGTGGTCGCGTAGCCATGGCACCAGGTAGCGGTGCATGTGGTTGCAGGCAGCCCGAGCCCGCGCCGCAGGGCGGCACGGGCCTGATTGGACTCGCAAAGGCGGTGGATGTAGCGGACGAACCGGTCCGAGACGCGGACGGTCGAGGTGGTCGGCGGGGCAGATGCCGCCGGCATGGAATCGGTCATGAGACGTCCCTGGTACGCAGGAAAGGGTGGTGACGGGCATCGGCTGTGGCGCGGCCGGCCGGGGTCAGCGCGTGGCGGACGGCTGCAGCAATGCGAGAAGGAGGCTGCGGGCCCGGTGCCGGGCGCGCAGCCACGCGGATGTCTGCCCGGTTGGCCTGTCCGATGGCCTCGTCGAGCGCGGCAAGGGCTGCATCGACGAACGGTTTGTCGACTCCCTGTGCGGTGTGCCCGGGGGTGGTGAGCT # Questionable array : NO Score: 4.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 71991-73306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIV01000031.1 Streptomyces sp. NRRL S-1896 contig31.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 71991 33 93.9 28 ..............................A.A CCCGCAACGCCCTGCTCGATGCCCTGCT 72052 33 93.9 28 ..............................G.A TGGCGTTCATCGTCGACCGTGGCCGGGA 72113 33 93.9 28 ...T.........................G... TCACCCCGGCCTTGATGCCGCCCCACAC 72174 33 93.9 29 ..............................A.T GGTTCAACCAGCGCATCGGCCTGCTCCGA 72236 33 93.9 28 .............................T..G CGCCCATGAACGCCTGGACGGGGGCGTG 72297 33 93.9 28 .............................G..T CGATCCTCGACGTCCGTAATCCGCCGTC 72358 33 93.9 28 .............................G..G GCCGGCTGCTCGCTGAACTGCCCGACCA 72419 33 93.9 26 .......T......................T.. GGCTCGCCCGGCTGCAAGTGCACCGT TG [72448] 72480 33 93.9 27 .............................G.A. CACCGGCTTCATCGTGATCTTCTCCAA G [72510] 72541 33 90.9 28 .............................G.CT ACGAACGGCAGATCGCTGCCCTCGAGGC 72602 33 100.0 28 ................................. TGGGGCAGAAGCGGATCAAGCTCCTCGC 72663 33 90.9 28 .............................G.CG GCGGCCTGGAGACCCGGTTCGACCTGCC C [72668] 72725 33 90.9 28 ............................TGA.. TGCAGGTTTTCGGCGGGGGTGCGGCGGG 72786 33 90.9 28 .............................TA.T CGGCCAGAGCAGCGTCCACCTGCGTCTC 72847 33 93.9 27 .............................A.A. GCAGGAGACCGTGGAGGCCCAGATCCG G [72877] 72908 33 97.0 28 ................................T ACAAGCTCCTCGTACAGGCGCTCGGGCG 72969 33 100.0 28 ................................. CGGCGGATTCGGTGCGGGCCGACCTGGA 73030 33 93.9 28 .............................AA.. TCATCGAGGCCCGCCGCGAGGTCGAGCG 73091 33 93.9 28 ........T.......................G TTGCAGAACGGAGCCGACGAACGAGGCG 73152 33 90.9 29 .............................GTA. GGACCAACCCCTCCCCTCCCCCACCGTGC 73214 32 93.9 28 ..-..T........................... CGAACCGGTTCAGCGTGTAGAGCTTCCG 73274 33 84.8 0 ...............A........C.....GCT | ========== ====== ====== ====== ================================= ============================= ================== 22 33 93.5 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Left flank : GCCAGCTCCGCGCTCAGGTGCTGGCTGCCATGCCACGAACAGAACTGAAACCCTGACACCTTGCCAATGTCATGCAGGCCGGCACACAGGCCCACGACCGCCCGCGCACGCTCCAGCTCCCCCGCCAGCCCCATCCCCTCAGCGATCCCGACACGCTGGTTCTCCGACAGATAGGCATCCCAAAGATGCAACGCCATCGCAGCAGCATCCAGGAGATGACGGATCAGCGGATACGGCGCCAGCCCCGCATCCAAACCCCTCGACTTCCCCCACACCGACTCATCCAGCGCCCCCCACATCCCCGACACCCTCGCCCCCTCACCCCACGCAGCAGGCCACACCCCACCACCAGGCCGGCATTCAACCACCCCCCACCGACACCACCGCCACCGTTCCCACCCCCGATAAAATGACAACGCGCAGCCCCGCCCACCGCGCCACAGAGCGCCCACCAAAGCAAAAGAAAAGCAAAGCCCTTCCTGAACTCCAGGTCACAAAGG # Right flank : TTGGATTCGGCCGTCTTGATCCCGAGGCCGTCCTCCTGCCGACGCGAAAACGTGGCTCACTTTCTACGGATCCGGCCCATGGCCTGCTCGGCGACCAGGCGGGCCTCGCGGATGTTGTCCAGCCAGGCGCCGCACACCGAGCGACCTGCGAGCAGCGCCTCTCAGCAGATCTGTTCGTCGTCCTGTCGCACCCACCAGTGAGATCGCAGGCTGGCCGTATCTTTGCCCCGTACTTCGCCCGTCGAAGTGACCTATCGCCTGTCGGGCCAGGCAGCCAGCACGTCACTGGTTTTTTCGTCGGTGAGGGTGAGGCGGGCGCCGGGCATACTCCCGTACTCGCCGACCCAGCGGCGGAACTTGTCCCGCGCCACCTCCTCACTGCGCCACCAGCCGTGCTGCACCGGCCGGCCGCCGGATTCGAGCAGCAGGTGGTAGCGGCCGGCGCCGGTCATGCGAGGCGGATCCCCCGCGACCGCCCCGGCTCGCGGACGATCGCGCGT # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //