Array 1 738600-738899 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059567.1 Neisseria shayeganii strain DSM 22244 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 738600 32 59.4 34 GATAAA.GG..T..AT..T.C........... CGTTTCGGCCGCCGTGAAAAAAAATACGCCCGTG 738666 32 93.8 34 .........CA..................... AGCTCAGGAATACCATCCACATAAAGCGGACGGT 738732 32 100.0 35 ................................ CCGGCCACAGTCTGAACGACAGCCTCTCGGGCTAG 738799 32 100.0 35 ................................ GCGTGAGCACGTCGGATAGGCTCAATTGATTCAAG 738866 32 84.4 0 C...............A..A....T......G | C,C [738886,738888] ========== ====== ====== ====== ================================ =================================== ================== 5 32 87.5 35 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : ACTCTCCGCGTTTGACACCCTCCAAACCCTAAGTCATAACACCAAACTTCACAGCGCACCCGTAGCTCAGTTGGATAGAGTATCTGGCTACGAACCAGAGGGTCGGGCGTTCGAATCGCTCCGGGTGCGCCATCAAGATTACGCGCCTACCGTCTAGCGGTTAGGACATCGCCCTTTCACGGTGGTAACCGGGGTTCGATTCCCCGTAGGCGTGCCAAATTTGAAGCCCCAAGACTGAAGTCTTGGGGCTTACCTCTTAGGTTGGTCGGCTAAAACAAATCACTCGACCAGAACACCCGTCCCACCATCTCAATCTCACTGAGGTGGACCACCTCATCTTGATATTCCGGGTTGTAGGTGAGGCCCAAAACTTGAGGCCAAATAAAAAAGCTCCCCGCCAAAATCCGTTCCGCAAAAAGTTTTCGACTATTGATTTTATTAGGGAAAAATCGAAGAAAATCGAGGATTTTGCGGAACGGATTTTGGCGGGGAGCCTTGTA # Right flank : GTAAGGATTCGTTTTTGAGCGATATTTGCTTAAAGATTTAGGCCGCTTGTGTCTGAGCCAGCTTAAGAACCAATTCGGCCAGGCGTTTGCCTTGTGCGAAGGCCAGGTTGGCTTCGTCGCTACTCAGTTGGGCTTGGCCTTCGCTGCCAGCGGCGTGGCTGGCGCCGTAGGGGGTGCCGCCGCTTTGGGTGTGGCTGAGGGCTGCCTCGCTGAAGGGGATGCCTTGGATCAACATACCGTGGTGCAGCAGGGGGATCATCATGCTCAGGAGGGTGCTTTCCTGGCCGCCGTGTAGGGAAGCGGTGCTGGTAAAGACGGTGGCGGGCTTGCCGATCAGGCTACCTGAAAGCCACAAGCCGCTGGTTTGGTCGAGGAAGTATTTCATCGGGGCGGCCATATTGCCGAAACGGGTGGGGCTGCCCAGGGCGAGACCGTGGCAGTTTTGCAGTTCTTCCAAGGTGGCGTAGGGGGCGCCGCTGTCGGGAATGTCGGGGGCGAGG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1474009-1473846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059567.1 Neisseria shayeganii strain DSM 22244 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1474008 32 100.0 34 ................................ GATTGCCCAACACAATGCCCGCAACACCCCGCAG 1473942 32 100.0 33 ................................ TGTCCCGAGTAGTCATTAAAGGTTTCAAACATA 1473877 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AAATAAAAGGGAAATACCATGCTGATGTTGATTACTTATGATATTTCGCTGGAAGACGCAGATGGGCAGGCGAGGCTGCGACGCATAGCCAAGCATTGCTTGGACTACGGCGTGCGCGTGCAATATTCAGTATTCGAGTGCGACGTAACGCCGGATCAGTGGGTAAAACTGAAAGCCAAATTATTGGACACTTACCAGCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGGGCAAGGTGGAGCATCATGGCGCGAAGGCGGCGGTGGATGTGTTTCAAGATACGCTGATTGTGTGATCGCTGACCCGTGGTTCTCATGAAAATGCGGGGAGGTTAGCGATGCGGGATTGTTTTTTAACAATCAGGAAATTAGGAAAGCGGGTGTGGCGGAATAAGGCTGTGTTATACTGCTTTTCGCGTTTTCGGGAGGCTTTAGCGAATCAGGGCTAAGCAAGCCTTGATGGATAAAGGTTTCTGAGAACGAA # Right flank : AAAAAATTCAGCACCCATGCCAGCTGCGTGTGGAAATAACGAGGCAGATAAAAGCAAAACGGTGTACCCAAGTCCGGTGGAGCGGATGCAGAACATACCTGTAGAATATGCCTTGCTCGACAAAGCTTGTGATACAAAGAACATTGGATTGTTGGCAGTTGACGGCTATCTGTACCGTATCACTTGCGGTATTCTGCCAAAGTTTGCAGGCAAGGTTTGCTTTGCGGATGGATATTGCCGATACCGGCGATACACGATTAATCCGCTTTTTGTTGCAATAACCAATCGTACAAATCTTTTTTGTGCGTACCGCTGATTTCGGCGGCTAGGGCGGCGGCCTTTTTGGGTGGCAGTTCGGCGGCCAGCAGCTGCATGATGTGCTTGGCCTGCGGCGTGAGCGCCTGTTCGGTGCGCTCAAGCGGCGGGTGTAGCACCAACACCATTTCGCCGCGGCTTTGGTTGGCATCGGCGGCTACTTGCGCCTGCACATCGGCCACGCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //