Array 1 8222-8769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFB010000023.1 Kurthia huakuii strain DSM 103359 Ga0454079_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 8222 29 100.0 35 ............................. GCATTTGAAAAGAAAAAAGATGAAGCGCAAGGAAT 8286 29 100.0 36 ............................. ATTTATGATACACGCTATCCAGATAAACTAATCGCT 8351 29 100.0 36 ............................. GATAATACGCTTCCTTCGCTTGTGTTGTTGTCACCT 8416 29 100.0 36 ............................. CCTTTCAATCAAAATGTAAAGCATCATTGGCGGCTA 8481 29 100.0 37 ............................. TAATCTTTTTATCATCTGGGGAGGTATTTATATTTGC 8547 29 100.0 36 ............................. ACTATCCGAGGGCTTTATATACGAGAACGGACTTTC 8612 29 100.0 35 ............................. GCACGTTGAGGACTAATAAAAGTAGCTTCAACATA 8676 29 100.0 36 ............................. AGCGTTATGTCGTGCAAGTAGGTTAGAGCATGCAGA 8741 29 93.1 0 .......C....................A | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 36 GTTTTATTTGAACATAGTGGGTTTTAAAG # Left flank : GCGAATACGCGTCAATATTTTTGTAGATTCAAGCTTTTTAGTTGCAGGTAATTTTTTACCTAGTAGTGCATTTAATAATGCTGTCATAATCGCTATTAAAATGAGGCGTTATTGACAATGCTGATTTCCCAAATTTTATTTAATCGAGTTAATTTCATAACTCCAAACCCTTGTCTCCCAAGGGTTTTAAAACAATAAAAAATGGGCACCTCCCCAAGATGGTATAATTTAAGTGACCAAACCAAAATTATCCAAGAGGTGAATGCCCTATGACTATTGTAAAACAAATGCGTCTATTTGACATCCATGAATTAATGGAAATGGAAAGTTCTCGTCGTTTCGATGCGATTTTAGCCACATTCGACTTACAACCGATCTTACAGCTATTTCGTAAAACGACGATGTATGGCGCACCACGAGAATTAAACTATGGTGCGATGGTGCAGTCACTTGTCATTCGGATTGTCTAGTGTATTATTAATGTATGATTCATGTTGCCG # Right flank : ATACGTTATTATCCGCAGCACATCAGACTAACATCTTCACCAAATGAAATCTCAGCTTACATTTTATATAAACCCCTCGCTTCTAAATAATTTTTAAATTAGCTGCAGCTTCAATCAAATTCACATGAATGCTGCTTTTTATATTGCGATTTTTTCATAGACCATTCAAAATTTCAATTTCTTTTTTAAATCCCCTCTCACAAATTAGCTCTCACCCCAAGAAGCGTGTTTTCGATACGACATATTTCTGAATATGCGTCACGTTTAAGCAGATACGCCTAGAAAAAAGCGAATCATTTGCTGATTGTTGTCATTTTCTCAAATAACTACTACTTGTGTGGCGATAGTTACGACAACTTTGTAATGTGGCCTCGCCAAAAGCGGACAAAAAATGCCCGTTACGATTCATTTTTGACCCCATTTCTACCGATAATGGGCTTTTTCCGCACAAACACTTTGCTAGATCGAGTGCAGCGTGTCGCATTTTTATTTTTTTGAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTGAACATAGTGGGTTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 63-1649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFB010000030.1 Kurthia huakuii strain DSM 103359 Ga0454079_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 63 33 100.0 33 ................................. TTCGCTGTTTTCCTTAAACTTGCTTAAACGTTT 129 33 100.0 34 ................................. GTCTAAAATGGCTCCCTGTCCAATCGCCAAAGCG 196 33 100.0 35 ................................. ATACGCTCGTAAGTTGCTTTGCTCAACACCCAAAC 264 33 100.0 35 ................................. AGAAGGTTTTAACTCCGTTTCCGAACTTGTTCCCC 332 33 100.0 35 ................................. TAAAACATTTACACTATGCGGTATATCTCGCATGA 400 33 100.0 34 ................................. ACGGTTATCCAACACGAAGAAAATGAAGCGGTTT 467 33 100.0 35 ................................. TCAACTTGATTCATAGCACCTTTAGCCATGTTATC 535 33 100.0 35 ................................. TACGACGAGCATATTGGCAAACGTAATTTTACGAC 603 33 100.0 36 ................................. AAAGGGATGGATAAGCCAGCAAAACTCAAATCAATT 672 33 100.0 34 ................................. ATTTCAAAGGAATGAAGGCGAAGGGCCCAACCAT 739 33 100.0 34 ................................. CTGTATACAATTTGCTGCTTTGTTTGTAGCTTGG 806 33 100.0 34 ................................. GGCTCGTTGTTTCCTATCGCTTACTTAGATTTTG 873 33 100.0 34 ................................. AAAAATAAAAATCTTATAGCCTTTGACACTACCT 940 33 100.0 34 ................................. GCTTTGACTTAACCTTGTCTTTTTTCTAGCTGCA 1007 33 100.0 36 ................................. TATCGATAAGTTTTTATCGCGTGTTACGAGCTTCGG 1076 33 100.0 35 ................................. CATTAGACGATCAAGGATAGCTGATTGATATTTAT 1144 33 100.0 35 ................................. AAAATGAACGCACAAAATTTAATTGATAACGTAGC 1212 33 100.0 35 ................................. GCCGCTTAGTAAAGTGCCCGGGACTCCTTATCACA 1280 33 100.0 33 ................................. AACTAACAGAGGTGTAACGTTTGAACTCAAAAA 1346 33 100.0 35 ................................. CTTGATAGCTTCGATGATAAGGTCTTTGTTATAGT 1414 33 100.0 34 ................................. CTTTGTCATCATCTTCTACGAGTTCAAGCGTTGA 1481 33 100.0 34 ................................. AGTTATTGTTTCTTTGTCTACATTAGGAATATAC 1548 33 100.0 36 ................................. ATCATCTGTCTGCTTATTTTTGTAGTATTCCCAATA 1617 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 24 33 100.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : AAAAGTTTAGAAAGAAATAGTGAATTCATGATAAATTCAGCTGAATTTATTAAGCGTTCGCCG # Right flank : TTTTTAAATCCTCTAACGAAAATGTCTCCGCTGGTGTCTCACTCTTCATTTAAAACGAGGATAACAGTTTTGTTTCTTGAAAAAACGCCCGAATGCATCCACATCCACAATCTGTTCACAGGAAGTTTGTAAGGCTACGCGATCTACGTTGCGTAACCACGCGGTATCATCTTGTTTCTAAATTTGGTCAGTAGTTTAGACATACTGGAACGATTTAACCCTTTTCCTTCTTTCTTATAAGAAGTATTCCAACGTTCAAGGAAATGGTTGTACACAAAACGGCAATGACCATGTGTTTGATGAATGAATGCTTGTTGGTCTTTAGTGGGGTAGATACGGAATTTGTAGGCTTTATGTGGCATGACAATCACCTCTTTCTACTTACTTATTTATGCCCTTGAGACTGAATGTATTTTTTAATCGTTATAAATGTCAACATGGTTAGGTACATTTTTGCGCATCTAAGTATGTACAATCATGCTCATAATAGCTATCACTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 327-1715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFB010000019.1 Kurthia huakuii strain DSM 103359 Ga0454079_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 327 33 97.0 35 ...........T..................... ACTGGCGGCTATCATGTATCGATTCAAAAATCACA 395 33 97.0 33 ...........T..................... TGCTTTTGCAGTTGTGCCGCAAGCATATTGTTC 461 33 97.0 33 ...........T..................... CAAAAATAACACTAGCGGTTATCCAGGTGTAGG 527 33 97.0 34 ...........T..................... TTTAGTGTCCCATTACCGACACCAAGGTTAGCTA 594 33 97.0 34 ...........T..................... ACTTCTGTGATTGGCGATTGCATTGTTAACGGTT 661 33 97.0 36 ...........T..................... TGGATGTTCAATATAGGCTGGTGAAATTGTGCGTTT 730 33 97.0 35 ...........T..................... ACCCGACCATGCAATGCATGAATCTTGATTTTCGA 798 33 97.0 35 ...........T..................... TCAACATCAAAGAATTATAATAGGTTTATCCTACC 866 33 97.0 36 ...........T..................... AACTTTGATGACGTTTTTGCATAATGTGTCAACGTG 935 33 100.0 34 ................................. AGCAACCAGTCCGCTATCTAAGCCGCGCTCTGTT 1002 33 100.0 37 ................................. CGAAGACAGGATTGTTGCAAAACACCGTTTTAAACAA 1072 33 100.0 34 ................................. CATTGGAAATTTTCGGAAAGCAAAACTCTATCTT 1139 33 100.0 36 ................................. AAGTAACTTCGCGCCGAGCGGGGCCATTCCGACTCC 1208 33 100.0 36 ................................. CTCCATCGTGTAAATTGCTTTTCGTTCGAATTGTTG 1277 33 100.0 35 ................................. GACATCTTCCTTGCTGTTGACGAAAAACGGCTCTA 1345 33 100.0 35 ................................. ATTAATAAATGAATAATAGGTAAGAGCATACTAGC 1413 33 100.0 34 ................................. TAATACTACAGGTGTACCATCTTCGAGCACTAAA 1480 33 100.0 33 ................................. TGCTTCAACTTTTGTTGTATCTGCATTTCTTTT 1546 33 100.0 33 ................................. CACGTATTGTAGACTTGCTCGATTTGCGCCCGT 1612 33 100.0 36 ................................. TTGATTCGATATAGCTTTGAAAATCTTTATATTATT 1681 33 84.8 0 ...........T.........CAC....T.... | TC [1711] ========== ====== ====== ====== ================================= ===================================== ================== 21 33 98.0 35 GTCTCACTCTTCATTGAGTGAGTGGATTGAAAT # Left flank : CATATTCAGAAATATGTCGTATCGAAAACACGCTTCTTGAGGTGAGAGCTAATTTGTGAGAGGGGATTCGATTTTTAAATGTTACTTAGTGGAGGGCTCATATTGCGAAAGCCATTTCTTCGGAAGAGGTTAGGAAAAAGAAGGCGTACATTGTATAATAGGTAAAAAGGTGCGAATGGGAAGCGCTCATAAAATCCCTAGTGTATTCGCACCCGTTTTTTAACTGTTTAAAGAAAGCAATCATGTTTGTTCTCTTTAAATAGAAAAAGTTTAGAAAGAAATAGTGAATTCATGATAAATTCAGCTGAATTTATTAAGCGTTCGCCG # Right flank : TGATTCGTGGCTTTTATAGTTAATATTACGATTCATAAAAGTACCCAAGAAAAAGTGTTATCGGTATGTAATAGCAGGATTGATTTTAATATAAAAAATAATTGCAGAAATTAATTATCTTTAAAAAATTTTTCGAATAATTTAAAATCAACACCGTAGTATTTTTTATACGGTGTCTTTTTTTCGCTCTTTTCGTCCGGAAGAACCTGTTTTTTTACAATAATATAGGACTGTTTGTTTTATTGGACATAGATAAACATACAATGGAAAAGTAAATTTAAAATATATTATTAATAAATAATGATATATAATTATTTCTGGTAAATAAAATTAGTCTTATGTAATTATAAAAATAATTCATTGATGAGTTCTTATATATAAGGAGATTTTTATTCAAATGAAAAAAATTATATCAAAAAAGCGTTTAAAGGGAATCATCCAGTCGTATATGGAGCGATATGATGAGGATCCCTTTTGGGGTGGTGAATTACAGTTTTTAC # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTCATTGAGTGAGTGGATTGAAAT # Alternate repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 40377-39024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFB010000019.1 Kurthia huakuii strain DSM 103359 Ga0454079_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 40376 35 83.3 29 A....T.A...-.......A..T............. TAATAAGTTTATTTACAGCATGACAAAAT T,CT [40358,40361] 40309 36 100.0 30 .................................... ATGTGGAATGGCCGATGATTAAACGGGATG 40243 36 100.0 30 .................................... TCATCGCAAGCACCTTGTCGTGCGGTAATA 40177 36 100.0 30 .................................... AATAAGTAATCAGTTGATACACCAAAGAAA 40111 36 100.0 30 .................................... ATTTGCGTAACGGTTACCATAGCATTTTCA 40045 36 100.0 31 .................................... GACGTATCGTGCGAAAGATGGGCAAAGTGAA 39978 36 100.0 27 .................................... GAATTGTGGACGTTCTTTTTTAGTACC 39915 36 100.0 30 .................................... ACTAGAATCAGCATTGGTGCAACGTAGACA 39849 36 100.0 30 .................................... TCCGCTGTCGTTGAGTCGTACACACGCACG 39783 36 100.0 30 .................................... TTAGAAGAAAAAGTAGATAAGAAGGTCGGC 39717 36 100.0 30 .................................... GGTAAACGTAGTGCAACGATGTACGCACTG 39651 36 100.0 30 .................................... TCGAAACCCTCTACATTAACATTAGCGCCG 39585 36 100.0 29 .................................... GTGTGGACGAAAACGGCGTTTATACAGTT 39520 36 100.0 30 .................................... TCTAGCTACTCGCCATAAACCACGTACAAT 39454 36 100.0 30 .................................... GATGCGGTAGCGGAAGTGTTTGGTAAAGAT 39388 36 100.0 30 .................................... TGATTGGCTGACTGCTGCGGCGTATAAACA 39322 36 100.0 30 .................................... ACCGGTCAAGTTGATAAAGGGACCGTTTTA 39256 36 100.0 29 .................................... TGTCATAGCTTTATGTGGATTATCTTTTA 39191 36 100.0 30 .................................... CCTTATCTAGCAATCACAGTATAGTATTTG 39125 36 100.0 30 .................................... ATTCAGAACTTTGTTGAATCACCGGGCTTT 39059 36 72.2 0 .........................ATAAAC.TTGT | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 97.9 30 GTTTTACTACTATCTAAAATTACATTGGTCTAAAAC # Left flank : AAATGCTCCAGTATCGTCATAGAGCACGCTAAGCGGTGTCCACGGTGCACAGTTTGAAGCGAGCGTCGGCACGACAATCACTTGCTTATGCACTTCATTGGCCACAGCCTTCGCTAAATCGATGACCTTTCCGCCACCGACACCAATAATCGCATCATAATCGCCCATCATAGCCGTCACACGTTCAATTTCAGAAAATGAACATTCGCCGCCGTATGTATAAAGCTCCGTTTGAACATCCGCCATCGCTGGCCAAAATGCTTCAATCGCCGCCCATGATTTCGTTCCGGTCACAATCAAGGCACGCGCAATACCACGCGCCTCTAATAAGCTCTCTAACTTTTTCAATATACCATCTTCTAAGATGTATTCACTTGGTGCTGCATGTACATGAATTGTTTTCATTGCTAAACCTTCTTTCTATAGTTATAGTATAAAACGAATTTTAAAGATTTTGTAGGTGATTTTTCAGAAAATTTGCGAAAAAAAGAAGCTGAATT # Right flank : AGTGCTATTAGCTACTCTTAAAAAAATCAAAAATGACTGCTCTGAATAAACTGTCTTAATTTCTTACAAAGTAATGGATTTTGCACAATAAGTTCTTCATACGCTAAAGAAATGGCGAGCTGATTCTTTGACAACGAATCGTTTTCTACTTCTCCTAATAAGTCTAATTCGGTTAGGAACGCTGTTAAATCAAAACGTTCCCGCGATTTTTTAATAAAATGCACATGTTCTACAGGAAATTGCATCAGCCACTCTTTGCTTTTTGTAATACAAATAATCGTACTTTTTGTATTTTTCAACATCTGCGCCCATAACTCTATTTTCTGAATATCAATATCATTTTCAGGAAAATGATAGATGATAATCGATGGTTTTCCATTTGTAAGCGAAGTCCATACTTGCAGAATAAATTTAAGGCGAGAAAAATTGGTTAATGGTTCTTCCATTTCTTTTATATCCCATTTTATATATTTTTGCAATTGTGTCAATTGAAATTCTTC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTACTATCTAAAATTACATTGGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //