Array 1 547552-548679 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOHZ01000001.1 Escherichia coli strain MOD1-EC5016 MOD1-EC5016_1_length_669855_cov_27.3478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 547552 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGTGATCCGCA 547613 29 100.0 32 ............................. CTTGTGCTTAGGAATAGTCTTAATTTTGTGTA 547674 29 100.0 32 ............................. TCCTTTTCCTGGGCGTCCCATTCGATCCGCTG 547735 29 100.0 32 ............................. ACATTACGACCGGCGATTGTTCCGACGCGGAT 547796 29 100.0 32 ............................. CCTGTGAGCCTGTCAGCGTCGAATAAATATAA 547857 29 100.0 32 ............................. TCACCATAGGCTTCATAGACGGGAACTACTGG 547918 29 100.0 32 ............................. AGTTTACCGGAGAATAGTTACCTGCAAGTCAT 547979 29 100.0 32 ............................. ATTTTATTATCGGCGAAACCAATTGCACGGCT 548040 29 100.0 32 ............................. CCGTGCGCGGTGTTCAGTTTGATCGGGTTGCC 548101 29 100.0 32 ............................. AACGCTGCAAAAGGCGCGAAAACGGTACAGAG 548162 29 100.0 32 ............................. GCAGATTTAACTGGGCGGCGATTTCTTTCGGG 548223 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 548284 29 100.0 32 ............................. CCCCCGGTGATCGAGATTCCAGGCGGGGAAAC 548345 29 100.0 32 ............................. ACCCGATCAATCAGTCGTTGTATCCAGCGCTC 548406 29 100.0 32 ............................. TACCCGAACCGCTCCCCGCACCATGCTTTATC 548467 29 100.0 33 ............................. AATTCCGAGCCTTTCGGATACGTTTCAGAACGC 548529 29 100.0 32 ............................. CATCACGAACCCGCTAAAGTCCATTCGGTAAT 548590 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 548651 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTATTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTGCTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTAATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 574380-575447 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOHZ01000001.1 Escherichia coli strain MOD1-EC5016 MOD1-EC5016_1_length_669855_cov_27.3478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 574380 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 574441 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 574502 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 574563 29 96.6 32 ............T................ ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 574624 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 574685 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 574746 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 574807 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 574868 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 574930 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 574991 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 575052 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 575113 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 575174 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 575236 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 575297 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 575358 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 575419 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //