Array 1 140526-138666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUCQ01000015.1 Escherichia coli strain CVM N36204PS N36204PS_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 140525 29 100.0 32 ............................. GCGCGCGACTACTGCCCGACCCGCCGACAACA 140464 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 140403 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 140342 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 140281 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 140219 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 140158 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 140097 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 140036 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 139975 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 139914 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 139853 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 139792 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 139731 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 139670 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 139609 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 139548 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 139487 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 139426 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 139365 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 139304 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 139243 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 139182 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 139121 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 139060 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 138999 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 138938 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 138877 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 138816 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 138755 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 138694 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 273-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUCQ01000037.1 Escherichia coli strain CVM N36204PS N36204PS_contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 272 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 211 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 150 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 89 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : C # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //